Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02326 ATGGTGCAGATATGTAGCATTATGGGGGATGTTAGGTCGGCCAATTTTTCATTAGACCCTGATGAAGTTGAGGCTGGGATGGTTTTGCGAAGACTGCTTCGGCAGCGTATATCTCCATCCAATACATTTAACAGTTTAGAATTTGATGTTATTCAAGTTGCTGCTCTAAAGCTGAACCTAATTTCAAGAAATTCCATTTTGATAGAGAAAAAGTCCATTCAAGAACTAGAGAAATTTCATTGTAAAGAGCAAAAGACTAAGAAAATCTTGAAATACTTTCTGTATCTTTTAAGAAAGTATGATGAATTACTTGTTCAACAACAAGATGGGAGCGTTGAGCCGCCGCCATCAACAGCAAGTGTGCAGGTGAAAAGTCAAGTTTGTACCTCTGAAACTAGTATCCCAGAACCTCCAGGGGAATTTAAATGCCCCATTTCTAGTAGTTTGATGCACGATCCTGTGATTATTTCATCTGGTCGGACATTTGAACGAATGTGGATTCAGAGGTGGATAGACGATGGTAATACAACTTGCCCAATAAGTGGTACAAAGCTAGAGGATTTGTCGATGGTTCCAAACTCTGCAATAAAATGCCTCATTTCTGGATGGTGTAGGAGATATGAGATTACAATTCCTGACCCTTGCTCAATACCTGCTTTGTTTCTTCCCTCATTTAATATTTCACATTCTAGTTCCATGAATAGTTTAGGCAGTCGTCAGAGTGACTTGGAGAGTCAAACTAGCAATGTGTCATCTAGCTCCTCAAACATGAATTGTGATGCAGGTTTTTCAGATGAAAAATCTCAAAGATTTCAACAGTTGGTCAATGCCTGCACTGTTTTAAGTTTTGTTTCTTCATGTAATGCGCCACCATCATGGGCATCTCAATGCAAAGCAGTCAATAATTTGAGAGAGCAGCTTTTGGACAATGAAGGAGCATGCCATTCAACAGTTTCTGTATGCATTGCCAAGCCACTAATTACCTTTTTGAAAAATGCCCTTGATTCAGGTGATGTAGAAGCACAAAGAGCTGGAACAGAGCTCCTTCTGGCCATCATGAGTAACAACAGAGATGAATTACTTGACCTGGATGAAGATGAAGTTCTCGTCCTAGCAGCATTTCTGGATTCTGATATGGCTGGAAAAAACCTTGCAGTCTTGGAAATTTTGTCTTGGCAACCGAAATTCAAATCTTTGATGGTGGCTTCTGGTCTTCTTCCCCTCATCTCAGGAGTTTTAAACACTGATGTAGTGGAATATCGTGTTCTAGCTTTGAAGATACTCCGTAACCTTTCATGCAACTGTAGCATGGAGTACCATTCAGCATATGTGGAGTATGTTCCAAAACTGATTCAATTTATGGGGGATCCCGTTATTGCAAATTCCTGCATTGAGATAATAAAAAATCTGTGTGATTCAGAAGGAGGGAGTAGTGGACTGTACAAAGCAAGTTCATGCATCACTGAAATTGCTCGATTCCTCGTAACTGGGACGAAGGTACAAGAATATACAGCTGATGTTCTCCATTATCTGTGTTATGAACGAGAGGAATACATCCCATTAGTTGTAAAAGAGAACGTATTTCAACCTCTGGTCCATATGTCTATAAATGGGAGTTACAGAGGAAAAGTCATTGCCGCAGAATTGCTCCAGCTCTTGGGACATACCTCTAATGGTGCTGTTTCAGAACATTCATTTTCACATCCTCAAGTTGGTTTGGGTTTGGGCAGAGACGTCCCCTCCACTTCTATAATCTGCAGTAAGGAAAACAAATCGATTTTCAAGAAACTTGGATTTCTGCAGATGAAGAAGCTGCCTACATTTTCACAACCTATCAAGTAG 1842 40.12 MVQICSIMGDVRSANFSLDPDEVEAGMVLRRLLRQRISPSNTFNSLEFDVIQVAALKLNLISRNSILIEKKSIQELEKFHCKEQKTKKILKYFLYLLRKYDELLVQQQDGSVEPPPSTASVQVKSQVCTSETSIPEPPGEFKCPISSSLMHDPVIISSGRTFERMWIQRWIDDGNTTCPISGTKLEDLSMVPNSAIKCLISGWCRRYEITIPDPCSIPALFLPSFNISHSSSMNSLGSRQSDLESQTSNVSSSSSNMNCDAGFSDEKSQRFQQLVNACTVLSFVSSCNAPPSWASQCKAVNNLREQLLDNEGACHSTVSVCIAKPLITFLKNALDSGDVEAQRAGTELLLAIMSNNRDELLDLDEDEVLVLAAFLDSDMAGKNLAVLEILSWQPKFKSLMVASGLLPLISGVLNTDVVEYRVLALKILRNLSCNCSMEYHSAYVEYVPKLIQFMGDPVIANSCIEIIKNLCDSEGGSSGLYKASSCITEIARFLVTGTKVQEYTADVLHYLCYEREEYIPLVVKENVFQPLVHMSINGSYRGKVIAAELLQLLGHTSNGAVSEHSFSHPQVGLGLGRDVPSTSIICSKENKSIFKKLGFLQMKKLPTFSQPIK 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 80762076 80764208 + Bma003188.1 Bma01g02326 76843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02326 613 Pfam U-box domain 138 205 IPR003613 GO:0004842|GO:0016567
Bma01g02326 613 SUPERFAMILY RING/U-box 129 213 - -
Bma01g02326 613 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 566 - -
Bma01g02326 613 MobiDBLite consensus disorder prediction 236 256 - -
Bma01g02326 613 CDD RING-Ubox_PUB 141 182 IPR045210 -
Bma01g02326 613 Gene3D - 255 566 IPR011989 -
Bma01g02326 613 PANTHER U BOX DOMAIN-CONTAINING 3 566 - -
Bma01g02326 613 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 210 IPR013083 -
Bma01g02326 613 ProSiteProfiles U-box domain profile. 136 210 IPR003613 GO:0004842|GO:0016567
Bma01g02326 613 SUPERFAMILY ARM repeat 291 554 IPR016024 -
Bma01g02326 613 SMART Ubox_2 140 203 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02326 - - - qlo:115974350 432.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02326 Bma-Chr1:80762076 Bma06g00574 Bma-Chr6:30839405 2.20E-53 dispersed
Bma01g02326 Bma-Chr1:80762076 Bma06g00119 Bma-Chr6:1626872 1.29E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g956 Blo01g01566 . . . Bpe02g00386 . . Bma01g02326 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017270 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6