Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02327 ATGTTCAGAAACCAGTACGATACGGATGTGACGACATGGAGCCCCGCTGGGCGATTGTTTCAGGTGGAGTATGCGATGGAGGCCGTCAAGCAAGGCTCGGCCGCCATAGGTCTTCGATCCAAGTCTCACGTGGTTTTGGCCTGCGTTAACAAGGCTAACTCGGAGCTTTCTTCGCACCAGAAGAAGATTTTCAAGGTGGATGATCATATTGGCGTCGCCATTGCTGGACTTACTGCCGATGGTCGTGTCCTCTCCCGCTACATGCGATCTGAGTGCATCAATTACAGCTACACTTACGAATCTCCACTTCCCGTGGGTCGACTGGTCGTTCAACTCGCTGATAAGGCGCAGGTATGCACTCAGCGATCATGGAAACGACCTTATGGTGTTGGTCTGCTGGTAGCTGGCTTAGATGAAACAGGAGCTCACCTATACTATAACTGCCCCAGTGGTAGCTATTTTGAATACCAAGCTTTTGCTATAGGATCCCGTTCCCAAGCTGCAAAGACATACTTGGAGCGAAGATTTGAGAGCTTCAGTGTTTCTTCGAGGGACGAGTTGATCAAAGATGCACTTCCGGGACCAAGAGAGACGCCAATCCAGTGCTTTATAAGGAGGGACAGATCAACCTCTACATATCGACTCTATCTCGATTGTAAATTGCCAGCTAGTTATGGTCTCGATGGTTATAGATTTTCAATTGACACTTTATTTATGATCAGATCCAATTTCATGGGAACAAAGTTTTCAATATGCGATAGTCAACCTCCACTGGATCCGACTATGCAAACAACTTCTAGTTCGCAACGAAGAGGCCATTTAAAGCGGGTTTCACCGAGAGTAACCATTGGAGACTATAATGTTTCCTCCATATCTTACGAGCTCAATGTCCTTCGAACCAGAGGTCCGAGGAGAATGCAGTGCACCATGAATTCAATACCAGTTTCATCCATTCAAGAAGGCGGCACAGCCCCTACTCCAACCGAATTTATCAAATGTCTCGACGAGAAACAAGATCCTCCACTGACAGTGGCCAAGAAAAAGAAGCGTCAAGTCGAGATTAGTTTCAGTAGTCTATCCGAGCCTCTCATCCCTGTTCATTCTCCACTTGTTCTGAAAAATAAAGCTCCGAGATGGCACGAGCAGCTGCAGTGTTGGTGCCTAAACTTCAGAGGACGGGTAACAGTCGCTTCCGTAAAAAATTTCCAGCTCGTGGCATCTGCTGATGATGTTTGCCAAAATGTTTCTGCTGCTGAGCAGGAGAAAGTGATTCTTCAATTTGGTAAAATTGGGAAAAACATATTCACCATGGATTATCGATATCCTCTATCCACATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACTAAACCTGCCTGTGAATGA 1392 46.48 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKSHVVLACVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDETGAHLYYNCPSGSYFEYQAFAIGSRSQAAKTYLERRFESFSVSSRDELIKDALPGPRETPIQCFIRRDRSTSTYRLYLDCKLPASYGLDGYRFSIDTLFMIRSNFMGTKFSICDSQPPLDPTMQTTSSSQRRGHLKRVSPRVTIGDYNVSSISYELNVLRTRGPRRMQCTMNSIPVSSIQEGGTAPTPTEFIKCLDEKQDPPLTVAKKKKRQVEISFSSLSEPLIPVHSPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASADDVCQNVSAAEQEKVILQFGKIGKNIFTMDYRYPLSTFQAFAICLSSFDTKPACE 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 80765164 80777134 - Bma003189.3 Bma01g02327 76844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02327 463 Pfam Tub family 239 458 IPR000007 -
Bma01g02327 463 ProSiteProfiles Proteasome alpha-type subunit profile. 21 192 IPR023332 -
Bma01g02327 463 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511|GO:0019773
Bma01g02327 463 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511|GO:0019773
Bma01g02327 463 PRINTS Tubby superfamily signature 372 389 IPR000007 -
Bma01g02327 463 PRINTS Tubby superfamily signature 420 439 IPR000007 -
Bma01g02327 463 PRINTS Tubby superfamily signature 441 463 IPR000007 -
Bma01g02327 463 PRINTS Tubby superfamily signature 285 312 IPR000007 -
Bma01g02327 463 PRINTS Tubby superfamily signature 236 260 IPR000007 -
Bma01g02327 463 PRINTS Tubby superfamily signature 390 406 IPR000007 -
Bma01g02327 463 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 1 198 - -
Bma01g02327 463 CDD proteasome_alpha_type_1 6 198 IPR035144 GO:0019773
Bma01g02327 463 SMART Proteasome_A_N_2 6 28 IPR000426 GO:0006511|GO:0019773
Bma01g02327 463 Pfam Proteasome subunit 29 191 IPR001353 GO:0005839|GO:0051603
Bma01g02327 463 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 191 IPR029055 -
Bma01g02327 463 SUPERFAMILY Tubby C-terminal domain-like 192 463 IPR025659 -
Bma01g02327 463 MobiDBLite consensus disorder prediction 256 275 - -
Bma01g02327 463 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 194 IPR029055 -
Bma01g02327 463 MobiDBLite consensus disorder prediction 256 272 - -
Bma01g02327 463 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 198 - -
Bma01g02327 463 Gene3D Tubby Protein; Chain A 195 457 IPR025659 -
Bma01g02327 463 ProSitePatterns Tub family signature 2. 448 463 IPR018066 -
Bma01g02327 463 ProSitePatterns Tub family signature 1. 390 403 IPR018066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02327 Bma04g00214 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02327 Bma-Chr1:80765164 Bma04g01098 Bma-Chr4:24956520 1.21E-88 dispersed
Bma10g01193 Bma-Chr10:42200570 Bma01g02327 Bma-Chr1:80765164 2.51E-41 dispersed
Bma04g00214 Bma-Chr4:1841168 Bma01g02327 Bma-Chr1:80765164 4.52E-139 transposed
Bma08g00864 Bma-Chr8:46774132 Bma01g02327 Bma-Chr1:80765164 1.97E-42 transposed
Bma01g02327 Bma-Chr1:80765164 Bma04g00212 Bma-Chr4:1832725 6.51E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56793 PF01167 Tub 1.80E-75 CL0395 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02327 K02725 - twl:120011496 372.859