Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02336 ATGGAAGCTGGAGGTATTCTTCATATGAATACAGGGAATGGAGCGACGAGCTATGCTCAGAACTCCGCAGTTCAGAATCGGATCATATCGATTGCAAAACCAGTGACGATGAAAGCCATTGAAGGACTGTTGGCAGGATCGTTGCCGGAGAGCATGGGGATAGCCGACTTAGGTTGCTCGTCGGGACCAAACACTTTAAACGTAGTGTCGGAGATAATGGACGTCGTGTACGATAAATACAGAGGCAATGGCCGGGCTTTGCCGGAGCTTAGCGTGTTTCTTAATGATCTTTATGAAAATGATTTCAACTACGTTTTTGGAATTTTACCAACTTTCCGACATAGGATTACGAAGGAGAAAGGCGTTGAGTTTGCCGAGAAATGCTCCATTTTCGGCGCCCCTGGTTCTTTTTATGGTAGACTGTTTCCCAGCAAGAGCCTCCATTTTGTTCACTCCTCTTCCAGTCTCCACTGGCTATCTCAGGAAGTTTTTTTAGAAAAGTTTTTGAAAATAGTTAGAAAATACACTGAAAATATAAAATCGATTCAGGCGCCGCCATGTTTGTGGAAAGAAGAAGGAAAGGAAGCGATGAACAAGGGGAAGATTTACATATCAAAGAAGAGTCCTCCATGCGTGCTGGAAGCTTACGCAGATCAGTTTCATCAAGATTTTTCTGCGTTTCTAAAATCACGTTCAGAAGAAATGGTGAAGGGAGGAGGAATGGTGCTGTCCTTCATTGGGAGACGATCTATGGATCCCACCTCTGACGAGAGTTATCTCCACTGGGAGTTCTTAGGGCAAGCCTTGATGAGCATGGTTTCCCAGGGACTGATTAAAGAAGAAAAAGTTGACTCTTTCAACGCTCCCTACTATGCTCCATGCATAGAACAAATACAAATGGAGGTAGAGAAAGAAGGTTCATTCACCGTGGATCGGAAGGAGTCTTTCGAAATCGATTGGGACGGAGGAAGTAACAAAGAAATCGTAGGCGATTTTGTAACTCAATCGAGCGGAAAACGAGTGGCGAAGACGATACGAGCTGTGGTAGAATCCATGTTCGAGTCTCATTTTGGAGGAGAAATTATCGATGAGTTATTCGTAAGATTTGAGAAAATCGTGGATGATCATCTTTCAAAGACAAGAGCCAAGTACATTAACTTGGTTATTTCTCTAGTGAAGAAATAA 1185 43.29 MEAGGILHMNTGNGATSYAQNSAVQNRIISIAKPVTMKAIEGLLAGSLPESMGIADLGCSSGPNTLNVVSEIMDVVYDKYRGNGRALPELSVFLNDLYENDFNYVFGILPTFRHRITKEKGVEFAEKCSIFGAPGSFYGRLFPSKSLHFVHSSSSLHWLSQEVFLEKFLKIVRKYTENIKSIQAPPCLWKEEGKEAMNKGKIYISKKSPPCVLEAYADQFHQDFSAFLKSRSEEMVKGGGMVLSFIGRRSMDPTSDESYLHWEFLGQALMSMVSQGLIKEEKVDSFNAPYYAPCIEQIQMEVEKEGSFTVDRKESFEIDWDGGSNKEIVGDFVTQSSGKRVAKTIRAVVESMFESHFGGEIIDELFVRFEKIVDDHLSKTRAKYINLVISLVKK 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 80956756 80958814 - Bma003200.1 Bma01g02336 76853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02336 394 Pfam SAM dependent carboxyl methyltransferase 46 393 IPR005299 GO:0008168
Bma01g02336 394 Gene3D Vaccinia Virus protein VP39 21 319 IPR029063 -
Bma01g02336 394 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 6 161 IPR005299 GO:0008168
Bma01g02336 394 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 183 392 IPR005299 GO:0008168
Bma01g02336 394 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 6 161 - -
Bma01g02336 394 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 183 392 - -
Bma01g02336 394 Gene3D - 6 380 IPR042086 -
Bma01g02336 394 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 394 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02336 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] - rcu:8275761 437.573
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02336 Bma-Chr1:80956756 Bma15g00701 Bma-Chr15:12669599 6.43E-160 dispersed
Bma01g02336 Bma-Chr1:80956756 Bma04g00217 Bma-Chr4:1857829 0 wgd
Bma01g02336 Bma-Chr1:80956756 Bma09g00086 Bma-Chr9:2143985 4.95E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g983 . . Bda01g00519 . Bpe02g00376 . . Bma01g02336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01988 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218