Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02340 ATGATGGATACGTATTTTCCGAGCATAAACAATCAAAGAAATGCTGTAATAACTCCATATATGGAAGACCCGAAAATCAACTCTTATTCAGAAATGCCTTTCTGCTCTAATAGTATGGTGATGGGCCTGAATCAAGGTCCTGCTCATGGATTTTACTCGAGCACTTCCAACTGTGTAGATAGTATGGAGGCCAGATATGAGATGGCCTTTCTTCCACAATTTGGACATTCGTTAGGCATCCAAGACTTTGCTTCAGAGCTAGAAACTGAAAAAATTGATCAGCTGGGAATTCCAAATGGCGGAAAGAATAGTCAGTGTGGGGGATTATCGCTCAGTCTCGGCTCGAAGATATCGTTTTCTGCTGGAAATCGAAGTGCCGCAGAAATGGAGACTTTTCCAAATTCTTCTGGCTTGGCCGCCCTCGGCAGAATGAACTCCAATGTTTATGATCCATATGAAGCTTCAGTTCTTGCTAACACTGGCTTAAACTTGAAATATGTCAAGGCAACTCAACAATTGCTTGATGAAGTGGTGAATATAAGAGCGGCTTTGAATGGGATCAGATCTAATAAACATAAAAGCTTCGTTAATGGCTCGAACAATAACAATGGCGGATCTAGTGGTCGATCTTTGGATATGTCTTCTAGTTATGGCACTTCGACGACCAACCCCTCTCGCGAACTCTCGTCTGTAGAGCGGCAGGACTTGAAGAACAGAAGTGCCAAGCTTTTGTCCATGGTTGAAGAGGTCGATGAAAGATACAGGCAATACCATCAACAGATGCAAATAATGGTGTCATCTTTTGATATGATAGCTGGTTGTGGGGCTGCAGAATTATATACAGCACTAGCTCATCAAACCATTTCATGCCATTTTCGACGTTTACGAGACGGAATTAGTGATCAGATTCAGGTAATGAGGAGAAATTTGGGAGAGGAAGATTGTTCATCGGCTGGTCAGAGGGGAATTCCTCGCCTACGCTATGTCGATCAGCAGCTCAGACAACACAGGGCTCTTCAACAACTTGGTCTCGCCCAACATTCTTGGAGGCCTCAAAGGGGGCTTCCAGAGAGCTCTGTCACGATCCTTCGTGCTTGGCTGTTTGAACATTTCCTTCATCCCTATCCGAAAGATACTGAGAAACTCATGCTCGCAAGGCAGACGGGATTGACACGAAATCAGGTCGCAAACTGGTTCATAAATGCACGTGTGCGCCTGTGGAAGCCCATGGTGGAGGAGATGTACAAAGAGGAGTTTGGTGATCCGACGATGGACTTCAACTTTTCACCAGAAAACACTTCCGGAGCTCCCAAAAATTGTTCGTTACCGTTCGAAGACCGGGACGAAGATTTGCAGGGCAGTGTAATATCATCGAATACCGATGGCGTGCAAAATCAGGAGTCGAATTCAAATGAATTTTCTGGTATGGAAATGAAGGAAAACACAAGCAAAATAGGAGTTGAAAGCCTCGGAAATGCAGAGAATATTCCCAATCACCCTCTTTATCCGCACAATATGATCTTATCGAACCGAGTCTCGCTTGCGTTGGAACTTGGAGCTGAGGCATTGCGGAAAAAATGA 1581 44.47 MMDTYFPSINNQRNAVITPYMEDPKINSYSEMPFCSNSMVMGLNQGPAHGFYSSTSNCVDSMEARYEMAFLPQFGHSLGIQDFASELETEKIDQLGIPNGGKNSQCGGLSLSLGSKISFSAGNRSAAEMETFPNSSGLAALGRMNSNVYDPYEASVLANTGLNLKYVKATQQLLDEVVNIRAALNGIRSNKHKSFVNGSNNNNGGSSGRSLDMSSSYGTSTTNPSRELSSVERQDLKNRSAKLLSMVEEVDERYRQYHQQMQIMVSSFDMIAGCGAAELYTALAHQTISCHFRRLRDGISDQIQVMRRNLGEEDCSSAGQRGIPRLRYVDQQLRQHRALQQLGLAQHSWRPQRGLPESSVTILRAWLFEHFLHPYPKDTEKLMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDPTMDFNFSPENTSGAPKNCSLPFEDRDEDLQGSVISSNTDGVQNQESNSNEFSGMEMKENTSKIGVESLGNAENIPNHPLYPHNMILSNRVSLALELGAEALRKK 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81010313 81012477 - Bma003206.1 Bma01g02340 76857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02340 526 Gene3D - 345 422 - -
Bma01g02340 526 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 122 519 - -
Bma01g02340 526 SMART prehox3 155 301 IPR006563 -
Bma01g02340 526 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677
Bma01g02340 526 CDD homeodomain 349 410 IPR001356 GO:0003677
Bma01g02340 526 SMART HOX_1 349 413 IPR001356 GO:0003677
Bma01g02340 526 Pfam Associated with HOX 165 300 IPR006563 -
Bma01g02340 526 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677|GO:0006355
Bma01g02340 526 MobiDBLite consensus disorder prediction 191 234 - -
Bma01g02340 526 MobiDBLite consensus disorder prediction 191 229 - -
Bma01g02340 526 SUPERFAMILY Homeodomain-like 350 417 IPR009057 -
Bma01g02340 526 MobiDBLite consensus disorder prediction 455 476 - -
Bma01g02340 526 Coils Coil 233 253 - -
Bma01g02340 526 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 122 519 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02011 Bma-Chr1:74608352 Bma01g02340 Bma-Chr1:81010313 1.04E-88 dispersed
Bma01g02340 Bma-Chr1:81010313 Bma04g00527 Bma-Chr4:4641565 6.13E-91 dispersed
Bma01g00745 Bma-Chr1:6871474 Bma01g02340 Bma-Chr1:81010313 4.60E-70 wgd
Bma01g02340 Bma-Chr1:81010313 Bma04g00222 Bma-Chr4:1894730 0 wgd
Bma01g02340 Bma-Chr1:81010313 Bma05g00135 Bma-Chr5:4158704 6.54E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56794 PF07526 POX 1.20E-42 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02340 - - qlo:115974406 446.432