Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02341 CTTAAGGCCTTGAGTAAGATTGCGTGCAATAGGCTCCAGAAAGAGCTTGTAGAGTGGCAGATTAATCCTCCTGCTGGATTTAAGCACAAAGTTACTGATAATCTCCAAAGGTGGGTTGTTGAAGTCAACGGAGCGCCGGGGACTTTGTATGCCAACGAAATCTATCAGCTCCAAGTCGATTTTCCCGAGCATTATCCAATGGAATCCCCTCAGGTGATTTTTCTTCCACCGGCCCCTCTGCATCCACATATTTACAGCAATGGACACATTTGTTTAGATATTTTATATGACTCATGGTCTCCAGCCATGACTGCGAGTTCCATCTGCATCAGCATTCTATCCATGTTATCCAGCTCAACTGTAAAGCAACGACCGGCCGATAACGATCGGTACGTGAAGAACTGCAGGAACGGCCGATCTCCCAAGGAGACGAGATGGTGGTTCCATGACGATAAGGTCTGA 462 46.97 LKALSKIACNRLQKELVEWQINPPAGFKHKVTDNLQRWVVEVNGAPGTLYANEIYQLQVDFPEHYPMESPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTASSICISILSMLSSSTVKQRPADNDRYVKNCRNGRSPKETRWWFHDDKV 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81016736 81018359 + Bma003207.1 Bma01g02341 76858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02341 153 Gene3D Ubiquitin Conjugating Enzyme 5 153 IPR016135 -
Bma01g02341 153 Pfam Ubiquitin-conjugating enzyme 11 146 IPR000608 -
Bma01g02341 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 7 153 IPR000608 -
Bma01g02341 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 80 95 IPR023313 -
Bma01g02341 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 153 - -
Bma01g02341 153 CDD UBCc 9 109 IPR000608 -
Bma01g02341 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 16-RELATED 6 153 - -
Bma01g02341 153 SMART ubc_7 10 153 - -
Bma01g02341 153 SUPERFAMILY UBC-like 4 121 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02341 K10688 UBE2W, UBC16; ubiquitin-conjugating enzyme E2 W [EC:2.3.2.25] - pvy:116127481 307.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02341 Bma-Chr1:81016736 Bma12g01189 Bma-Chr12:44721038 1.57E-21 dispersed
Bma01g02341 Bma-Chr1:81016736 Bma15g00984 Bma-Chr15:38232607 1.94E-97 wgd
Bma01g02341 Bma-Chr1:81016736 Bma06g00109 Bma-Chr6:1538574 2.70E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1009 Blo01g01578 . Bda01g00514 . Bpe02g00371 . . Bma01g02341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003259 4 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 4 1 1 1 1 4 1 2 49