Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02345 ATGGCAGGCTTCTTCTATCTAGGTGGAAGAGAAGGCCCACCAAGCAAACAAGAAGACGATCAAGCTGAGAGGGAGCAGAACCTGTTTTTATACAAAAACGAGGAGATCTACAACAAGGGTTTCGAGATATGGCCTCAGTACAGTCATCAACAACAACAAAACCAAAGCTTGAGCAGCAACCTGTCGTTCGGAGTGGGTCCTGGCCACCGAAGAAGCTTCATCAACGTTTCCGATGATCCGCCCAGGTTGGGATTCACCGTGAGTAGACAAGGAGGGGCGGTTGGAGGAATGAATTGTCAAGACTGTGGAAATCAGGCTAAGAAAGATTGCTCCCATCTTAGGTGTAGAACTTGCTGTAAGAGTCGAGGGTTTCAGTGTCAAACCCACGTCAAGAGCACGTGGGTTCCGGCGTCCAAACGCCGCGAAAGACAGCAACAACTCTTAGCTTCGAATTCTCAGCAAGAACTGCAATTTCCGAGAAGGCAGAGGGAAAATGAAAGACTCTCCTCTACTCTTGCCTGGTTAGAGCTGGCACAATTTCCAGCGGAAGTGAATTCTGCAGCAGTTTTTCGGTGTGTGAAAGTGAGCGCTATGGATGATGTGGATGACCAGTTCGCTTATCAGACGGCTGTGAACATCGGAGGACATGTTTTTAAGGGAATTCTGTACGATCAAGGACCGGAAGGAAGCTATTCTGCTGGAGGGGACAGCTCTTCCGGCCAAGGCGGAGAGGGAATCCAGCAGCTCAATCTTATAACCGGAATGATCGGAAACACGTCCGCAGTTTCCGCCACTAAAGCATCCACTTCTAACCCATTTGCTTGTTTGGTCGATTCTTCAATATATACTCCGCTCAATGCTTTCATGGCTGGTACGCAATTCTCCCCTTCTTCAAGGTCATAA 903 48.62 MAGFFYLGGREGPPSKQEDDQAEREQNLFLYKNEEIYNKGFEIWPQYSHQQQQNQSLSSNLSFGVGPGHRRSFINVSDDPPRLGFTVSRQGGAVGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPASKRRERQQQLLASNSQQELQFPRRQRENERLSSTLAWLELAQFPAEVNSAAVFRCVKVSAMDDVDDQFAYQTAVNIGGHVFKGILYDQGPEGSYSAGGDSSSGQGGEGIQQLNLITGMIGNTSAVSATKASTSNPFACLVDSSIYTPLNAFMAGTQFSPSSRS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81040150 81041295 - Bma003211.1 Bma01g02345 76862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02345 300 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 296 - -
Bma01g02345 300 MobiDBLite consensus disorder prediction 1 23 - -
Bma01g02345 300 Pfam Domain of unknown function (DUF702) 96 228 - -
Bma01g02345 300 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 98 140 IPR006510 -
Bma01g02345 300 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 179 227 IPR006511 -
Bma01g02345 300 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 296 IPR007818 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02345 Bma01g00741 CCT
Bma01g02345 Bma05g00149 CCT
Bma01g02345 Bma01g00741 ECH
Bma01g00741 Bma01g02345 ECH
Bma01g02345 Bma05g00149 ECH
Bma01g02345 Bma04g00224 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02345 Bma-Chr1:81040150 Bma03g00977 Bma-Chr3:10398751 2.79E-65 dispersed
Bma01g00741 Bma-Chr1:6793248 Bma01g02345 Bma-Chr1:81040150 8.57E-104 wgd
Bma01g02345 Bma-Chr1:81040150 Bma15g00973 Bma-Chr15:37616023 4.43E-78 wgd
Bma01g02345 Bma-Chr1:81040150 Bma04g00224 Bma-Chr4:1914050 6.69E-166 wgd
Bma01g02345 Bma-Chr1:81040150 Bma05g00149 Bma-Chr5:4476375 5.89E-115 wgd
Bma01g02345 Bma-Chr1:81040150 Bma09g00096 Bma-Chr9:2564937 3.71E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56796 PF05142 DUF702 6.80E-62 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02345 - - jre:108991308 362.073