Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02346 ATGGCGAGGGGGAAGATTCAGATCAAGAGGATAGAGAATCCGACCAACAGGCAGGTCACCTATTCTAAAAGACAAAAAGGATTGTTGAAGAAGGCGGAGGAGCTCTGTGTTCTCTGCGATGCTCAGGTTTCCATTATTATATATTCTGGCACCGGAAAACTCCATGAATTCAGCTCCACCACCACGACGAAGGAGTTGCTCGATCGTTACCAGAGGGCATTAAATGTTGATCTTTGGAACTCGCATTATGAGGTGCAGAGAATGCAAGAGAGTCTGAAGAAGCTGAAAGAAGTCAACTGGAATCTCCGAACGCAGATAAGTAGGCAAAGGGTTGGCCAATGTCTCGACGATCTGAACTTCGAAGAACTGCTTCGTCTTGAACAAGATATGGAAGATGGTGTCAAGTCTATTCGGGAGCGCAAGGTTAGGCTTAGATCTACCGGTCGTTCATCATTCTTCAGCTTTGGATTTTTATCTAAAATCCTCGAAATTACACAATCTAAAGATCCACAGTATGGAGGGGTTGAGGTCGATGGCGGAGGAGGTTACGGATCCATTGTTGGATTCTCAAACGGAGGTCCACATTTATTTGCACTCCGGCCGCAACACAACCAGCTTCATCTCGCCGGAGCCGGATCGGATCGGAGAACTTATCCCTTGCTTGAGTAG 669 46.79 MARGKIQIKRIENPTNRQVTYSKRQKGLLKKAEELCVLCDAQVSIIIYSGTGKLHEFSSTTTTKELLDRYQRALNVDLWNSHYEVQRMQESLKKLKEVNWNLRTQISRQRVGQCLDDLNFEELLRLEQDMEDGVKSIRERKVRLRSTGRSSFFSFGFLSKILEITQSKDPQYGGVEVDGGGGYGSIVGFSNGGPHLFALRPQHNQLHLAGAGSDRRTYPLLE 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81048997 81050303 + Bma003212.1 Bma01g02346 76863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02346 222 Coils Coil 85 105 - -
Bma01g02346 222 ProSiteProfiles K-box domain profile. 85 209 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma01g02346 222 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bma01g02346 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma01g02346 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma01g02346 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma01g02346 222 Pfam K-box region 82 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma01g02346 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma01g02346 222 PANTHER APETALA3 1 219 - -
Bma01g02346 222 Coils Coil 218 222 - -
Bma01g02346 222 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Bma01g02346 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 219 - -
Bma01g02346 222 SUPERFAMILY SRF-like 3 88 IPR036879 GO:0003677|GO:0046983
Bma01g02346 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma01g02346 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02346 Bma04g00225 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02346 Bma-Chr1:81048997 Bma15g00963 Bma-Chr15:36735011 1.25E-36 dispersed
Bma01g02346 Bma-Chr1:81048997 Bma01g02352 Bma-Chr1:81152783 2.56E-47 proximal
Bma01g02346 Bma-Chr1:81048997 Bma04g00225 Bma-Chr4:1918926 1.38E-68 wgd
Bma01g02346 Bma-Chr1:81048997 Bma09g00098 Bma-Chr9:2633901 2.24E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56797 PF01486 K-box 3.60E-11 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02346 K09264 - csin:114263054 220.705