Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02351 ATGGCTAATAATATGGATGGGGATGAGAAGCCCGGATCTACTAAAAGATCACAGCTAAATGAAGGTGGTTTCGAGCCAGATGATGACGAGCCCATTAGGTATTTATTCAAATTGAAGCAACCTCACTTTCCTAAGAAACCAAAATTGGGCATAGATGGCGGTGGTGAAAGAGGAAAGAAAGCTGGGATAAAAGGAGGGAAATTGGTTCACGAAGATAGGGATTCTTGGGGAATGGATGATACTTTAGCTAGCTTCAGGAAAAAGTTAAAGGGCCCAAAGAAAAAAATTGAAAATGTGCAAGAGAGTTCAACTTCACGTATAGTAGAGTATTCCCATGTATCTGGCAGTGAGCCTGTTGGACTCGAGGCACCAAATGTCAGACTGGCACCGATAGTGGAGGAAAATGCAAAATTATTAAGTGATGTAGAACCTGACATAACAATGAGTCCATCGATAGAGAAGAAAAGAAAAGTAAATGGGAAGAGACGGAAGGATAATTCTACTTTGAGGACATCTGATGGCCATGTTGATTGCAGTAATGGGGCAGAATTTTTGAAATCTGGGTGCAAGGCGCTGAAGGATCAGGAGAAGAAGGGCAATAGCCTTGTAGTTGGTCCTAAGCATTTTGTAAACAAACATTTGGAGGGCTCATTACCAGTATTTTCTCAAAAGATGCAATCTGGTTTAAATGGTAGTTCACTGACACTTTTAAACGGAAATAAGACAGTTAAAGCAGATATTTCTGGATTACATCGATTAGATTTGATTTCAGATGGATTAACCACAGTGGAAGATCAAAGGATAAATAAAAATTTTCAGCAAACTTCCGACCATGTTGAAATTAATCATTATGAAAAACAAAGGTTAAATCATTCCCAGTGGATTGAAGAGGAGGCAGAAGAAAACCTCAGCTGTTCGAAGATTAAAGAGGACTCTATGCTTGGTCCAAATGGATTGCATGAATTCTGTGACGGGGAAAGCAAGGAGGGTCTTTGTTTGCAATCAAGAGATGGTTATTTTTCTTCCATCTTGAAAGATATGACCCCAACACTCAACAATGGATTTAGTCGTTGCAGCAGAACTAGAACCAGGACAATGATTCATGATTCTGTTGATTCATTAAATTCGTGTTATGAAGAAAAACATATTAAAGAAATTCATGGGTTGGATGATGGGACTCTGGTTAGTTGTTCCAATGAATTCTCTAGAAAATCAGCAAATATTTTGTCGGACCACACTTTAAGTGCAGACTGTGATGGCAAAGATAATCTACTTTCTAGCTGTGACGATGGATTGCCAAATAATCAATGCAACAATGGATCCAGAGTTGATCAAATATTGGCATCCAGAATGGGGGTATCAACTAGAGATTTGCCTCCATTTTCCATTCAACGAAACAACACGAAAGAAGCTTGGAAATCTAAAACTGAGATTTATTCTGATAGGCATATAGCAGCACGGAAAACTAAGAAGCCCAAGTATGGAGATATGGCTTATGAAGGGGATGTTGATTGGGAGAACTTGACAGACGAGTCTGACTTTCTTGAAAATCATCGTGCAATGGAAAATGATAATTGTTTTAGAGAAGGAAGGGATTCTGGTCTAAATATTGTTATGGACATTGACAATGGCGGGGCGGCTGCAATATCAGTAGGACTGAAAGCTCATGCAGTTGGTCTGATTGAAAAAGTTAGATTTAAAGAGCTCTTAAAACGAAAGGGTGGGCTTCAAGAGTATGTGGAAATCAGGAACCTGATCTTAGACCAATGGTTTAAAGATGTTACTCGTATTCTGCCCCTTTCTGATTGTGGGATCAAAGATACTATCTCAACAGATGGAAAATTGCGTGCTTCCCTCGTCAGAGAGATCTATTTGTTTCTCGATCAGAGTGGTTATATTAATTTTGGTATCGCTTCAGAGAGGGATATATCTGATCCAAGTCACAATAATATGGTTCTCAAAGAAAGAAATAACAAACACGATACTGATTCTCTGGCTGCTGATGCAGACGATGGGGTTTCATTTATTATCGGGCACATTCGAAGTTCTGAAAAGAATGGTGTGACATTTGATGTGGAAGAGCCACTGGAAGCTACCAGAGGAAGAGACTTTACTTCTGAACTCAATTCAGAGATTCCACATGTGAATGAGCTTCATGAACGTAGTCCTGTTGATTGTCTAGAAGGCAGCAGTGTTATTGTAAAAGAATCCAGGACATTAATTAGTGAGAATGTGCCATGTAGTAATATATCTTGTGATACAATAGATTGTAAATCTCCAACTAGCTTGATTCCTGATCTGACAAATAGATTGCCTTGCATTCATTCTTCCCCCAATCATTACCATCAGTCTGAAACAGATATTGGAAAGAAAATCATTGTCATAGGAGCTGGTCCTGCTGGATTAACTGCTGCACGACATTTGCAACGTCAGGGTTTTAATGTCACAGTACTTGAAGCCAGGAGCAGATTAGGAGGTCGTGTTCACACTGATCGCAGTACGTTTTCAGTTCCTGTCGATCTTGGCGCAAGCATTATTACAGGCATTGAGGCAGATGTTGCAACTGAAAGAAGACCTGATCCTTCTTCATTGGTTTGTGCTCAGTTGGGCCTTGAGTTAACTGTCTTGAACAGTGACTGCCCTCTCTATGATATAGTAACTCGGCAAAAGGTTCCTGCAGATCTGGATGAAGCATTGGAAGCTGAATACAACAGTCTTCTTGATGATATGGTATTACTTGTCGCTCAAAAGGGGGAACATTCTACGAGAATGTCTCTTGAAGAGGGATTAGAATATGCTCTTGAGCAGCGGCGTATGGCACAATTGGGCAGGAATATTGAAGAAAACATGCTTAAAAGTTCTATAGACACCTTATCTACTTGTAAAAATATTTCTGTGAGTAAGTCTGCTACGGAAGAGATTTTGAGTCCACTCGAGAGGAGGGTTATGGACTGGCATTTGGCTAACTTGGAGTATGGTTGTGCTGCTTTACTCAAGCAAGTATCTCTTCCGCATTGGAATCAGGATGATGTTTATGGAGGTTTTGGAGGAGCTCATTGCATGATCAAAGGGGGTTATAGCACTGTTATTGAGTCTCTTGGAGAAGGACTTAGCATTCATCTGAACCATTTAGTGACAGATATTTCTTATGATTTGGAGAAGACTTGCCCAAATGATGATTCTAGTGGGAAAGTGAAGGTTTCCACTTCAAATGGTAGTGTGTTCTTCGGAGATGCTGTCTTGGTCACAGTTCCTCTTGGGTGCTTAAAAGCAGAAACCATAAAGTTTTCTCCACCATTACCCCAATGGAAGCAATCTTCCGTTCAACGCCTTGGTTTTGGAGTTCTTAATAAAGTTGTTTTGGAATTTCCCGAAGTTTTCTGGGATGACTCGGTTGATTACTTTGGAGCAACTGCTGAGGAAACAAACTGGAGAGGTCAGTGCTTTATGTTCTGGAATGTTAGGAAAACTGTCAGTGCTCCTGTTCTTATTGCATTAGTTGTTGGTAAGGCAGCTGTAGATGGGCAAAATCTAAGTTCTTCTGTTCACGTAAACCATGCATTAATGGTTCTTCGTAAACTTTTTGGAGAAACTTTGGTGCCTGATCCAGTTGCATCTGTAGTAACTGAGTGGGGGAAGGATCCGTTTAGCTATGGTGCTTATTCATATGTTGCTGTTGGAGCATCTGGAGAGGATTATGATATTTTGGCCAGGCCTATTGGGAACTGTTTATTTTTTGCTGGTGAAGCTACTTGCAAGGAGCATCCTGACACTGTTGGTGGTGCGATGATGAGTGGTCTTCGGGAGGCAGTGCGGATTATCAATGTACTAAGTAATGGTTATGATTACATTGCAGAAGTTGACGCAATGGAGGCCGCTCAAAGACAATTTAACGGAGAAAAGGATGAATACAAGGACATATTAAGAAGACTTGATGCAGTAGAGCTTTCTAATGACCTGTATCATAATTCACTTGGCACTGCCACAATTATGACGAGGGAAGATTTACTAAAGAATATGTTCTTTAATGCTAAAACCATGGCAGGGAGATTGTATCTGGCAAAAGAGTTATTGAATCTTTCTGTTGAAACACTGAAGTCATTTGCCGGAACCAAAGAAGGGCTTACTGTGCTCAATTTGTGGATACTGGATTCAATGGGGAAAGATGGGACCCAACTCTTGAGGCACTGTGTTCGACTGCTCGTGCTTGTTTCAACTGATCTATTTTCTGTGCGTATATCCGGCATTGGGAAAACTGTCAAAGAAAAGGTTTGCGTACATACAAGCCGTGATATACGTGCCATTGCAAGTCAGTTGGTTAGCGTTTGGCTTGAAGTCTTCCGTAAAGAAAAAGCTTCAAATGGTGGAACAAAATTAAGGCCACCAATGGCTGTTGATTCATCAAAACGAAAGTGTCTTAAAGATTCTTCTGGAAAGCCCCCTTTGCATGCCAACTCTGGTGGCCCTGAAGGTAAAGGTGTGTTACAGACGTCTTATTGCAAACTGTTGAAACAAGACTTGGTAAGCAAACCAGAGATCAGCTCATCAAGGTCCAGAGGATCTCTGAGTGATGTGGATGCCGAGGAGGAAGGTGATAATGTTGCCATGTCTGAAGAAGAACAGGCTGCATTTGCTGCTGCTGTAGCAGCCCAGGCTGCACTTGCAGCTGCAGAGGCACGTGCATTTTCAGAAGGCAAGTGCAATACGACAGTGCAACTACCGAAGATACCCTCTTTTCATAAATTTGCCAGACGAGAGCAATACGCTCAGAGAGGTGAATGTGATATTCAGATGAGGTTCTCTGGCAATATTTTGGGAAAACAAGATAGTATATCTGAAATAGACTCAAGAAACTGCAAAGTAAGAAACTGGTCTGTTGATTTCTCGGCTGCTTGTATCAACCAATATAATTCAAGAGTATCTGGTGAAAATCTCTCTCCGCAAAGCCATTCCAATGAAATCATTAGTCAGTTAAACTGTAGGGAACACTCGGGAGAAAGCATGGCTGTGGATAGTAGCATTTATACGAAAGCCTGGGTTGATACATCTGGTAGTGAGGGGATGAAGGATTATCATGATATCGAGAGATGGCAATCTCAAGCAGCTGCAGCCAGTAATAATTTATTCTGGCCCCTTAGGCGTATAAAGGACGAGGAGGAATCAAACACTACTTTAAAGGAAGCATTGTGGAGTGATAAAGTAGCAAATGAAAGCTTAGTTTCACAAGTTACGATGAGCAAGGAGTATGTAAAAGATTATCCCCGTGGAGCAGAGAAAATTAAACAGGCAGTTGTTGATTATGTTGCAACGTTGTTAATGCCTCTTTATAAAACAAAGAAAATTGACAAGGAGGGATACAAGTCAATAATGAAGAAAAGCGCCACTAAGGTTATGGAGCGGGCTACAGATGCAGAAAAAGCTATGGCTGTTCATGAGTTTCTTGATTTGAAACGTAGGAACAAGATTCGTCCCTTTGTTGACAAATTAATAGAGAGGCACATGGCAATGAATACAGTTGGGAAATAA 5526 40.81 MANNMDGDEKPGSTKRSQLNEGGFEPDDDEPIRYLFKLKQPHFPKKPKLGIDGGGERGKKAGIKGGKLVHEDRDSWGMDDTLASFRKKLKGPKKKIENVQESSTSRIVEYSHVSGSEPVGLEAPNVRLAPIVEENAKLLSDVEPDITMSPSIEKKRKVNGKRRKDNSTLRTSDGHVDCSNGAEFLKSGCKALKDQEKKGNSLVVGPKHFVNKHLEGSLPVFSQKMQSGLNGSSLTLLNGNKTVKADISGLHRLDLISDGLTTVEDQRINKNFQQTSDHVEINHYEKQRLNHSQWIEEEAEENLSCSKIKEDSMLGPNGLHEFCDGESKEGLCLQSRDGYFSSILKDMTPTLNNGFSRCSRTRTRTMIHDSVDSLNSCYEEKHIKEIHGLDDGTLVSCSNEFSRKSANILSDHTLSADCDGKDNLLSSCDDGLPNNQCNNGSRVDQILASRMGVSTRDLPPFSIQRNNTKEAWKSKTEIYSDRHIAARKTKKPKYGDMAYEGDVDWENLTDESDFLENHRAMENDNCFREGRDSGLNIVMDIDNGGAAAISVGLKAHAVGLIEKVRFKELLKRKGGLQEYVEIRNLILDQWFKDVTRILPLSDCGIKDTISTDGKLRASLVREIYLFLDQSGYINFGIASERDISDPSHNNMVLKERNNKHDTDSLAADADDGVSFIIGHIRSSEKNGVTFDVEEPLEATRGRDFTSELNSEIPHVNELHERSPVDCLEGSSVIVKESRTLISENVPCSNISCDTIDCKSPTSLIPDLTNRLPCIHSSPNHYHQSETDIGKKIIVIGAGPAGLTAARHLQRQGFNVTVLEARSRLGGRVHTDRSTFSVPVDLGASIITGIEADVATERRPDPSSLVCAQLGLELTVLNSDCPLYDIVTRQKVPADLDEALEAEYNSLLDDMVLLVAQKGEHSTRMSLEEGLEYALEQRRMAQLGRNIEENMLKSSIDTLSTCKNISVSKSATEEILSPLERRVMDWHLANLEYGCAALLKQVSLPHWNQDDVYGGFGGAHCMIKGGYSTVIESLGEGLSIHLNHLVTDISYDLEKTCPNDDSSGKVKVSTSNGSVFFGDAVLVTVPLGCLKAETIKFSPPLPQWKQSSVQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETNWRGQCFMFWNVRKTVSAPVLIALVVGKAAVDGQNLSSSVHVNHALMVLRKLFGETLVPDPVASVVTEWGKDPFSYGAYSYVAVGASGEDYDILARPIGNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIINVLSNGYDYIAEVDAMEAAQRQFNGEKDEYKDILRRLDAVELSNDLYHNSLGTATIMTREDLLKNMFFNAKTMAGRLYLAKELLNLSVETLKSFAGTKEGLTVLNLWILDSMGKDGTQLLRHCVRLLVLVSTDLFSVRISGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRKEKASNGGTKLRPPMAVDSSKRKCLKDSSGKPPLHANSGGPEGKGVLQTSYCKLLKQDLVSKPEISSSRSRGSLSDVDAEEEGDNVAMSEEEQAAFAAAVAAQAALAAAEARAFSEGKCNTTVQLPKIPSFHKFARREQYAQRGECDIQMRFSGNILGKQDSISEIDSRNCKVRNWSVDFSAACINQYNSRVSGENLSPQSHSNEIISQLNCREHSGESMAVDSSIYTKAWVDTSGSEGMKDYHDIERWQSQAAAASNNLFWPLRRIKDEEESNTTLKEALWSDKVANESLVSQVTMSKEYVKDYPRGAEKIKQAVVDYVATLLMPLYKTKKIDKEGYKSIMKKSATKVMERATDAEKAMAVHEFLDLKRRNKIRPFVDKLIERHMAMNTVGK 1841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81097390 81223161 - Bma030300 Bma01g02351 76868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02351 1841 MobiDBLite consensus disorder prediction 1 72 - -
Bma01g02351 1841 Pfam SWIRM domain 556 635 IPR007526 GO:0005515
Bma01g02351 1841 SUPERFAMILY FAD-linked reductases, C-terminal domain 1112 1223 - -
Bma01g02351 1841 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 478 1838 - -
Bma01g02351 1841 MobiDBLite consensus disorder prediction 1511 1531 - -
Bma01g02351 1841 PANTHER FLAVIN MONOAMINE OXIDASE 478 1838 - -
Bma01g02351 1841 Gene3D - 902 1229 - -
Bma01g02351 1841 PRINTS Adrenodoxin reductase family signature 791 813 - -
Bma01g02351 1841 PRINTS Adrenodoxin reductase family signature 814 827 - -
Bma01g02351 1841 SUPERFAMILY FAD/NAD(P)-binding domain 789 1277 IPR036188 -
Bma01g02351 1841 MobiDBLite consensus disorder prediction 9 36 - -
Bma01g02351 1841 MobiDBLite consensus disorder prediction 1454 1491 - -
Bma01g02351 1841 MobiDBLite consensus disorder prediction 45 72 - -
Bma01g02351 1841 MobiDBLite consensus disorder prediction 150 173 - -
Bma01g02351 1841 SUPERFAMILY Homeodomain-like 546 639 IPR009057 -
Bma01g02351 1841 Pfam Flavin containing amine oxidoreductase 800 1274 IPR002937 GO:0016491
Bma01g02351 1841 Coils Coil 1290 1310 - -
Bma01g02351 1841 Gene3D - 544 645 IPR036388 -
Bma01g02351 1841 ProSiteProfiles SWIRM domain profile. 544 644 IPR007526 GO:0005515
Bma01g02351 1841 Gene3D - 792 1272 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02351 - - - mnt:21385577 1812.35
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02351 Bma04g00227 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02351 Bma-Chr1:81097390 Bma04g00234 Bma-Chr4:2013905 0 dispersed
Bma06g00870 Bma-Chr6:43449109 Bma01g02351 Bma-Chr1:81097390 1.77E-29 dispersed
Bma05g00199 Bma-Chr5:5480573 Bma01g02351 Bma-Chr1:81097390 3.84E-96 transposed
Bma07g01173 Bma-Chr7:46279507 Bma01g02351 Bma-Chr1:81097390 1.11E-91 transposed
Bma07g01198 Bma-Chr7:46780025 Bma01g02351 Bma-Chr1:81097390 8.12E-96 transposed
Bma01g02351 Bma-Chr1:81097390 Bma04g00227 Bma-Chr4:1933499 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1051 . Blo12g00895 Bda01g00502 . . Bpe04g00232 Bma04g00227 Bma01g02351 . . . . . . . . . Bhi04g00234 . . . . . . Cla08g01440 Cam08g1920 Cec08g1496 . Clacu08g1610 . Cre08g1396 . . . . . . . Cme03g01899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56798 PF01593 Amino_oxidase 2.30E-108 CL0063 Bma TR