Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02358 ATGGATTCTGCTGAAGAGAAGGTAAATGCTTGTGGTTTGGTTAATGGCGGGCAGACTAATCTTCTTGAGGAGATGAAGTTATTGAAAGAAATACAGGATCAGTCTGTTGCTCGAAGGGTCATAAATTCAGAGTTATGGCATGCCTGCGCTGGCCCTCTCGTTTCTTTGCCTCAGATGGGGAGCCTTGTATATTACTTCCCTCAGGGACATAGCGAGCAGGTAGCAGTTTCAACTAAAAGAATAGCAACTTCCCAGATTCCAAACTACCCTAATCTTTCGTCTCAGCTGATGTGCCAAGTTCAAAATATCACATTACATGCAGACAAAGATTCCGACGAGATTTATGCTCAAATGAGTCTCCAGCCAGTGAACTCTGAAAAGGATGTTTTCCCAATACCGGACTTCGGATTACGGCCAATCAAACATCCAACTGAGTTTTTCTGCAAAACTTTGACTGCAAGTGATACCAGCACGCATGGTGGTTTCTCTGTACCACGCAGGGCAGCTGAAAAGCTTTTTCCTTCATTGGATTTTACGATGCAACCACCGACTCAAGAACTTGTTGTGAGGGACTTGCATGATATTACATGGACTTTTCGCCATATATACAGAGGGCAGCCAAAGAGACACCTTCTGACGACTGGATGGAGTTTGTTTGTGGGTGCAAAAAGGCTCAAAGCTGGTGATGCAGTTCTATTTATCAGGGATGAAAAATCGCAATTACTTGTCGGAATAAGGCGAGCCAATCGTCAGCAAACTACTTTACCGTCTTCTGTTCTCTCTGCCGATAGTATGCATATCGGTGTACTCGCTGCTGCGGCTCACGCGGCTGCTAATTATAGCCCATTTACAATATTCTACAACCCAAGGGCGTGTCCTTCAGAGTTTGTGATTCCTGTGGCTAAGTATCGAAAGTCTGTATATGGAACTCAACTTTCTGTCGGAATGAGGTTTGGAATGATGTTTGAAACTGAAGAATCCGGAAAGCGCAGATATATGGGTACATTGGTTGGTATAAGCGACTTAGATCCGTTAAGGTGGCCGGGTTCCAAGTGGCGAAATCTTCAGGTGGAATGGGATGAGCCTGGATGTTGCGATAAACAAAACAGAGTCAGTTCGTGGGAAATTGAAACGCCGGAAAGTCTCTTTATTTTTCCTTCTCTAATGTCGGGTCTGAAACGACCATCGCATAATGGATTTCTGGGCGAAACCGATTGGGGAAGTTTGGTTAAAAGACCTTTTATACGGATGCCTGAAAATGGTCATGAAAATTTTCCGTACCCAGTTTCGAGTTTATATTCTGAACAGATGATGAAGATGGTTGCGAGACCTCAACCATTTAATCTCCAAAGATCTTCTCTACCTCAAGAATCAGTTTTCAAGGTTGACCAATTATCAAACGTGAAGACCTTTCAGCCTGTAATTAATCAAAAGACTCAGCTCGTCTCTTCGGAAAGCATGTCCTTTCAAAATCAAACTCATCCTTCATCTTCTTGCCCTGCTCAATCTGAGGCCATAACTTCAAATTCATCATTGACGTCTAATTTATCCGTAAAACTTGTTTCCCCATCCACCCTAGGCAATAAAATACAAGCTGTAGCTAATGGGGAGTGCACAAAGTTCAATTCTGAGCTCACAACAGATCAGTCAGGCCAGTTGACCTCGACTGGAGAGTGTCGAGAAGAAAAACTAAGTTCTGGCCATGAAAGTCTGCAGAGCTATGCTAATCATTTGCCATCTCTAATACAGGGTCAGACTCCATTACAATTGCAAGCTAATGCTTGGCCTATCCAGCCTCCAATGGAATCGCTGATACACCATTCTCAGCCGATTGACATGCCTCAATATGATTGTTCTGGCCCAACTGCCTTGCTTCCATCTTTAGAGGGTGATGGATGTATAATTAACACCTCCTACCAACCTCTGTCAGGAGTTATTAGACCTCCAGGGCCTTTATCGATGGCAAGATTGCCGGACCAATTTGGCGGATTTCCGGAATCACTTAACTTTCCTTTACCATTGGCTGGTCATGAATCCTGGGATAATCTAAGGTTCTTGTCCCATGCAAATCAAATGCCCTTATTCTCACATCAAGAGCCGGCTAGTTTGAATTGTGCGGCTAATTCAAATGGTTTAAGGGATTTGTCTGATGAAAGCAACAATCAAAGTGGAATATACAGTTGTCCTAATATTGATGCTAGTAATGGTGGAAGTAGTGTTGTCGACCCTTCTGTTTCAAGTGCCATTCCTGATGAATATTGCACATTAAAGGATCCCGAGTTTCAAAACCTGTCAGATTGTTTAGTCGGGAATTTCGGGTCGACCCAGGATGTGCAGTCCCAGATCACTTGTGCTAGTCTTGGACATTCACAGGCTCTAACCCGCCAAATATCCGACAATTCCGGTGGAACATCATCATGCAACCTAGATTTTGATGAAAGCAGCCTGTTACAGAGCAGCTCGTGGAAGCCGGTAGTTCCTCCACCCATGAGAACTTACACAAAGGTTCAGAAGGCGGGATCGGTGGGCAGATCTATAGACGTGACTAGTTTTAAAAACTACGACGAGCTGAGCTCCGCAATAGAGTGTATGTTTGGACTAGAGGGGTTGCTCATTGACCCAAGAGGCTCTGGATGGAAATTGGTTTATGTGGATTATGAAAATGACGTGCTTCTCGTCGGTGATGATCCCTGGGAGGAATTCGTAAGCTGTGTTCGGTGCATCAGAATTCTATCACCTTCTGAAGTCCAACATGTGAGTGAAGAGGGTATGAAGCTCCTTGACAGTGCCATTACTAATTGCTTCGTCGCAGAGGGTGGCCAATAA 2826 44.2 MDSAEEKVNACGLVNGGQTNLLEEMKLLKEIQDQSVARRVINSELWHACAGPLVSLPQMGSLVYYFPQGHSEQVAVSTKRIATSQIPNYPNLSSQLMCQVQNITLHADKDSDEIYAQMSLQPVNSEKDVFPIPDFGLRPIKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPSLDFTMQPPTQELVVRDLHDITWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDAVLFIRDEKSQLLVGIRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANYSPFTIFYNPRACPSEFVIPVAKYRKSVYGTQLSVGMRFGMMFETEESGKRRYMGTLVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLMSGLKRPSHNGFLGETDWGSLVKRPFIRMPENGHENFPYPVSSLYSEQMMKMVARPQPFNLQRSSLPQESVFKVDQLSNVKTFQPVINQKTQLVSSESMSFQNQTHPSSSCPAQSEAITSNSSLTSNLSVKLVSPSTLGNKIQAVANGECTKFNSELTTDQSGQLTSTGECREEKLSSGHESLQSYANHLPSLIQGQTPLQLQANAWPIQPPMESLIHHSQPIDMPQYDCSGPTALLPSLEGDGCIINTSYQPLSGVIRPPGPLSMARLPDQFGGFPESLNFPLPLAGHESWDNLRFLSHANQMPLFSHQEPASLNCAANSNGLRDLSDESNNQSGIYSCPNIDASNGGSSVVDPSVSSAIPDEYCTLKDPEFQNLSDCLVGNFGSTQDVQSQITCASLGHSQALTRQISDNSGGTSSCNLDFDESSLLQSSSWKPVVPPPMRTYTKVQKAGSVGRSIDVTSFKNYDELSSAIECMFGLEGLLIDPRGSGWKLVYVDYENDVLLVGDDPWEEFVSCVRCIRILSPSEVQHVSEEGMKLLDSAITNCFVAEGGQ 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81282895 81287110 - Bma003229.1 Bma01g02358 76875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02358 941 Pfam AUX/IAA family 876 917 IPR033389 -
Bma01g02358 941 PANTHER AUXIN RESPONSE FACTOR 5 28 932 - -
Bma01g02358 941 SMART B3_2 147 249 IPR003340 GO:0003677
Bma01g02358 941 Gene3D - 144 248 IPR015300 -
Bma01g02358 941 Gene3D - 828 920 - -
Bma01g02358 941 SUPERFAMILY CAD & PB1 domains 843 910 - -
Bma01g02358 941 Pfam Auxin response factor 273 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bma01g02358 941 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
Bma01g02358 941 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 932 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma01g02358 941 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Bma01g02358 941 SUPERFAMILY DNA-binding pseudobarrel domain 134 276 IPR015300 -
Bma01g02358 941 CDD B3_DNA 146 247 IPR003340 GO:0003677
Bma01g02358 941 Gene3D - 311 383 - -
Bma01g02358 941 ProSiteProfiles PB1 domain profile. 831 915 IPR000270 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02358 Bma04g00238 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02358 Bma-Chr1:81282895 Bma07g00655 Bma-Chr7:10909727 7.57E-37 dispersed
Bma01g02358 Bma-Chr1:81282895 Bma04g00238 Bma-Chr4:2055814 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56801 PF02362 B3 4.40E-21 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02358 K14486 - csv:101216825 1320.45