Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02369 ATGAGGGAGATCCTGCATGTTCAAGGAGGTCAATGCGGCAACCAAATCGGTTCCAAGTTCTGGGAAGTGATCTGCGAAGAGCATGGTGTCGATCCCACCGGTAGGTACAAAGGGGATGGGTCTTCCGATCTTCAACTCGAGCGGATTAACGTTTATTTCAATGAGGCTTCCGGTGGTAGATATGTTCCTAGAGCTGTTCTCATGGATCTTGAACCCGGAACTATGGACAGTATCAGATCTGGCCCTTTCGGCCAGATCTTTCGCCCCGACAATTTTGTTTTTGGGCAGTCCGGCGCTGGTAATAATTGGGCTAAGGGGCATTATACAGAAGGAGCGGAGTTGATTGATTCAGTTCTCGATGTTGTTCGCAAGGAGGCTGAGAATTGCGATTGCTTGCAAGTTGGTGACCTGAACCATCTGATATCCGCAACTATGAGTGGAGTGACCTGCTGCCTTAGGTTCCCTGGCCAACTGAACTCCGACCTTCGAAAGTTGGCTGTCAACCTCATCCCATTTCCTCGACTCCACTTCTTCATGGTGGGTTTTGCTCCCCTCACAGCCCGAGGATCCCAGCAATACATCTCACTCACAGTTCCAGAGCTTACCCAACAGATGTGGGATGCCAAGAACATGATGTGTGCTGCCGACCCTCGCCATGGCCGATACCTCACAGCCTCGGCCATGTTCAGGGGAAAAATGAGCACCAAAGAGGTAGACGAACAGATGATCAATGTACAGAACAAAAACTCCTCATACTTCGTGGAGTGGATTCCAAACAATGTGAAGTCAAGCGTGTGTGATATTCCTCCAAGGGGACTAAAAATGGCTTCCACTTTCATAGGAAACTCCACATCCATTCAAGAAATGTTCAGGAGAGTGAGCGAGCAGTTCACTGTCATGTTCCGTCGTAAAGCTTTTTTGCACTGGTACACCGGGGAAGGAATGGACGAAATGGAGTTTACTGAAGCCGAGAGTAACATGAATGATTTGGTAGCTGAATACCAGCAATATCAGGACGCAACAGCAGAAGACGATGTCGAATATGAAGAAGAAGGTGAAGAACACTACCAGGACTAA 1077 48.47 MREILHVQGGQCGNQIGSKFWEVICEEHGVDPTGRYKGDGSSDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQVGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAEDDVEYEEEGEEHYQD 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81353617 81355595 - Bma003240.2 Bma01g02369 76886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02369 358 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 134 IPR036525 -
Bma01g02369 358 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Bma01g02369 358 SUPERFAMILY Tubulin C-terminal domain-like 156 341 IPR008280 -
Bma01g02369 358 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Bma01g02369 358 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874|GO:0007017
Bma01g02369 358 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874|GO:0007017
Bma01g02369 358 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Bma01g02369 358 CDD beta_tubulin 2 338 - -
Bma01g02369 358 SMART Tubulin_C_4 158 295 IPR018316 -
Bma01g02369 358 Pfam Tubulin C-terminal domain 173 294 IPR018316 -
Bma01g02369 358 Gene3D Helix hairpin bin 286 342 IPR023123 -
Bma01g02369 358 Gene3D - 175 285 IPR037103 -
Bma01g02369 358 PANTHER TUBULIN BETA-1 CHAIN-RELATED 134 350 - -
Bma01g02369 358 PANTHER TUBULIN 134 350 IPR000217 GO:0005874|GO:0007017
Bma01g02369 358 SMART Tubulin_4 49 156 IPR003008 GO:0005525
Bma01g02369 358 Pfam Tubulin/FtsZ family, GTPase domain 3 135 IPR003008 GO:0005525
Bma01g02369 358 Gene3D Tubulin/FtsZ, GTPase domain 1 134 IPR036525 -
Bma01g02369 358 PANTHER TUBULIN 1 133 IPR000217 GO:0005874|GO:0007017
Bma01g02369 358 Gene3D Tubulin/FtsZ, GTPase domain 135 174 IPR036525 -
Bma01g02369 358 PRINTS Beta-tubulin signature 90 101 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bma01g02369 358 PRINTS Beta-tubulin signature 110 128 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bma01g02369 358 PRINTS Beta-tubulin signature 43 60 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bma01g02369 358 Coils Coil 320 340 - -
Bma01g02369 358 PANTHER TUBULIN BETA-1 CHAIN-RELATED 1 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02369 K07375 TUBB; tubulin beta - dnm:101414361 536.954
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02369 Bma01g00727 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02369 Bma-Chr1:81353617 Bma14g02083 Bma-Chr14:44195217 5.54E-83 dispersed
Bma01g00727 Bma-Chr1:6655160 Bma01g02369 Bma-Chr1:81353617 1.12E-90 wgd
Bma01g02369 Bma-Chr1:81353617 Bma04g00249 Bma-Chr4:2124776 8.10E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1118 Blo01g01599 . . . . . . Bma01g02369 Cmo05g00312 Cmo12g00357 . . . Car12g00384 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda08g01218 . . . Bma01g00727 . . . . . Cma05g00309 Car05g00257 . Cpe11g00258 . . . . . . . . . . . . . . . . Csa02g02138 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220