Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02371 ATGGCTGGGAACTTTGGGTTTGATATGGACCAAAGAGACATCGATAGTTTTTTGAATACGACCATCGATAGTTTTATCGAAAATCAGCTGCTTGACAAACAAAAGCGAACCCAACAGAAAGAACAGTGTGCAGAGAGATTGGCTGCTGAAGACGGAAGCTCTGATAAAGATGAAGGAGTTAGATACTCTGATCAAGCTGTGTTGGCAAATTTGGATTGGGGAATTGAAGCTCTTGAGGAAGCCATTGACACTTCCAACATAGAAACCAAGCTTGCTCGATTGAACCACGCCGAGAAGATGTTGCAAGTTTGTGCTCTATTGAACTACAAAGACAAAACTGCTGGAATCCCAAATTTCTATCTTTCTGCATGGGCACATCTCAATCTTTCATACCTGTGTAAACTGCGAGGAAATCTTCAGAATTCTGTTCTTCATGTTCTTGAGATGTTTTCGGTGGACCCTTTTTTCTCAAGGATCGATTTCGCCCCTGAACTTTGGAAACAAATTTTCCTCCCTCATATGAGCTCTATCATTGGGTGGTATTCTGAGGAGTGGCACAAACTTTTGATGGAAGTAATACCAGATTCTGATTTGTCCTTCACAGCTGATTTAGAACAATTCTTCCACGAGTCTTTGATCTTTTCACTAAGGCCTGATCAATTGGAGAAATTGCAAAAGTTAGAGCAAATTTATGGAGATTCATTAGATGAAAACACTAAGCTTTATGCAAAATATTTCAAGGACCGCATGGATTCAGATTCAACCAAGAAGGTTTCACCAATGCTACCCATTGCAGAGCCACCAATGACTCCTCTTCGTGAAGTCAGTTCTTCCATTCCAGATTTTGTAAAATTTGGACCCATTTTGCCTAAGAGCGCTGGGTTTGCTTCAATTATGAAATCCAAGAATGAGGCCAGAGAAGCAAGCAGCAGACTCGAAGTTAACTGTTTGCCAAAGAACCCGGACAACATTTCCAGGTGGGATGCTAAGAAGGACGTCTTGGTCGAGGAGAACGAAGACGAGTCTTACTACGAACCCAATGCTTGTTCTGTGGATCTACATGATAATACATCTCATAAGTCATTATCTGTTTCCAGCCTGAAAATGGTGGAGGAAGAGCAAACAGAGACTACAACAGGAGCATGTAATGCGAAGAATCATGCACATTATTTGACAATCTTTTCACCCATCGATTCCCCTTCGACTCCTTCCCCAAACATTTTGTCTCCAAAAATGGAGGTACGAAGTAGAAAAGAACCTAGTTTATTGCGATTATCGTCCAGCCGCATTGCTGATTCCAATGTCTCAACCTCTTTCCACGACTCTCCACACTTAAGAAGTCACAGTACTAGTCCAGCAGACTCCGATAATGAAGAGGTGGTGATGAAGAACACTCGCAAGAAGAAACATAGTGGGTCCAAAAGAATGAACTTTGAAAATGTGAACAGACAAGCTATAGAAAATAGCTCCCGCTCCACTTGGGAACCTGAAGAGGGCAGCCAGAGCCACGATCAATTGTCATCATCAGACAGCCTTGCTCATCGCTATCGACTGCCAAAGGACTTTGTATGTCCAATAACTGGCCAGATTTTTTGTGACCCTGTTACACTTGAAACAGGTCAAACATATGAAAGAAAAGCAATACAGGAATGGGTGAAGAGAGGAAACACAACATGTCCTATTACACGACAGCCTCTTTCTTCATACACATTGCCGAAAACAAATTATGTTCTAAAGAGATTGATAACGTCTTGGAAAGAACAACACCCTGATCTAGCTCATGATAACTCACCAACAAACTCACTTGGCATTTCCTGCACAAACGAGAGTCCATTGGCCTCCACTCCTTGCACAGAATTTTCAAGCTGCCCCAAAACATATGAGTATCTAAGCCAAAAGAGTGAAAGATTAATGGTCGAGCCCCGGAAAATGAGCATTTACCGGGAAGAAGCTATAGACAGTCTTATTGAATCCATTCAGAGAAAGGACTTTGCTAATAATCAAATGATCGCTTTGGATGCCTTGATATCTCTGACAGGGCGTTTCACTCCCTCAGGAAGGCCATACACCGAAGCCTGGTTACTTAAGCTTGCAGGGTTTGATCAACCTTACAATTCTATGATGAAGGCAGAGCGGCTCAGTGGACACGACAAAGATTTTGTCGAGACAATGGAAGAGGAAGAAAAAGCTCTTACGACACTGCTTTCATTTCTTCCCGACATCGGTACACAAGAAACTGCTCGCAAGTCCTTCCTTCATCAGCTCATCAATGTTCTTCAATCATCAAAAAATCTGGAAGAGAGAATATTAGCGACCCTTGCTCTGAAAACATTTATAAATGATCCAGCTGCACTTGAAGAACTGGGGGTGCATGTCAAAAGCATTTACAAAATCTTGAGAAAGATTGGGAGGAAAGCAGTAGTTGCAACAGATATATTAAAAGCCTTGATCACTTTGCCATCTGTTAATGTGGCGGAGCTCTGGCAATATACCGATGTTGCAGAGCTAGACTCGTGCATTAATGGAGAAGTTCTGACCTTGATTCACCTTAAAGGTTTTCTTCTAAGTGGTCATTCTGATGGAACCATCAAGGTTTGGGGTGCAGGGAAGAGAACATTGAAGCTGGTTCAAGAAGCTCATCAACACACAAAAGCAGTAACATGCCTCAATGCCTCGACTTCTGGTGACATAGTTTACAGCGGTTCACAGGACAAAACAATTCGGGTCTGGGCAGTCAAACATGAAGAAATTCAATGCATTCAAGTCCACGACGTAAAAGAGGCAGTACTCAACTTGACAGCCAATGTTAATGTAGCATGCTTTATCTCTCAAGGAGGAGTCAAGGTTTATAGCTGGAATGGGCTTCCTAAGCAGATAAATTTCAACAAATATGTCAAGTGCTTAACAATGTCAGAAGATAAACTCTATTGCGGCTGCTCGGACAGTATTCAGGAGGTGGATTTGTCGACACACACATCGACTGTATTCTACGCTGGAATTAGAAAATTATTGAGCAAGCAAACCATCTATTCCTTGCAAATTCATGATGGTCATCTCTATGCATGTGGTTCTTCTGTCGACGGAATAGCTGGAAAGATATTCTCCCTCTCCACCAAGGAAGTAGTAGGATCATTCTCAACCAGCATTGACATCCATAACATTGCCATAACCAGCGATTGCGTATTTACATCAACAAAAAGTGGAATCATAGAGCTATGGCAAAGAGACAAATTTTCAAAATTGAATTCCATTAAAAGGGGTGGAGTTGGACATGCAAAAATTACATCCTTGACGACAGATTCGGACGGGGGATTGCTTTTCGTCGGTTCCTCGGATGGAAATATTCAGGTTCGCGCTTGA 3360 42.08 MAGNFGFDMDQRDIDSFLNTTIDSFIENQLLDKQKRTQQKEQCAERLAAEDGSSDKDEGVRYSDQAVLANLDWGIEALEEAIDTSNIETKLARLNHAEKMLQVCALLNYKDKTAGIPNFYLSAWAHLNLSYLCKLRGNLQNSVLHVLEMFSVDPFFSRIDFAPELWKQIFLPHMSSIIGWYSEEWHKLLMEVIPDSDLSFTADLEQFFHESLIFSLRPDQLEKLQKLEQIYGDSLDENTKLYAKYFKDRMDSDSTKKVSPMLPIAEPPMTPLREVSSSIPDFVKFGPILPKSAGFASIMKSKNEAREASSRLEVNCLPKNPDNISRWDAKKDVLVEENEDESYYEPNACSVDLHDNTSHKSLSVSSLKMVEEEQTETTTGACNAKNHAHYLTIFSPIDSPSTPSPNILSPKMEVRSRKEPSLLRLSSSRIADSNVSTSFHDSPHLRSHSTSPADSDNEEVVMKNTRKKKHSGSKRMNFENVNRQAIENSSRSTWEPEEGSQSHDQLSSSDSLAHRYRLPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWVKRGNTTCPITRQPLSSYTLPKTNYVLKRLITSWKEQHPDLAHDNSPTNSLGISCTNESPLASTPCTEFSSCPKTYEYLSQKSERLMVEPRKMSIYREEAIDSLIESIQRKDFANNQMIALDALISLTGRFTPSGRPYTEAWLLKLAGFDQPYNSMMKAERLSGHDKDFVETMEEEEKALTTLLSFLPDIGTQETARKSFLHQLINVLQSSKNLEERILATLALKTFINDPAALEELGVHVKSIYKILRKIGRKAVVATDILKALITLPSVNVAELWQYTDVAELDSCINGEVLTLIHLKGFLLSGHSDGTIKVWGAGKRTLKLVQEAHQHTKAVTCLNASTSGDIVYSGSQDKTIRVWAVKHEEIQCIQVHDVKEAVLNLTANVNVACFISQGGVKVYSWNGLPKQINFNKYVKCLTMSEDKLYCGCSDSIQEVDLSTHTSTVFYAGIRKLLSKQTIYSLQIHDGHLYACGSSVDGIAGKIFSLSTKEVVGSFSTSIDIHNIAITSDCVFTSTKSGIIELWQRDKFSKLNSIKRGGVGHAKITSLTTDSDGGLLFVGSSDGNIQVRA 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81364659 81370559 - Bma003242.2 Bma01g02371 76888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02371 1119 Pfam U-box domain 519 589 IPR003613 GO:0004842|GO:0016567
Bma01g02371 1119 MobiDBLite consensus disorder prediction 395 409 - -
Bma01g02371 1119 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 638 - -
Bma01g02371 1119 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 731 1118 - -
Bma01g02371 1119 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 731 1118 - -
Bma01g02371 1119 SMART Ubox_2 521 585 IPR003613 GO:0004842|GO:0016567
Bma01g02371 1119 SMART WD40_4 1038 1074 IPR001680 GO:0005515
Bma01g02371 1119 SMART WD40_4 1077 1119 IPR001680 GO:0005515
Bma01g02371 1119 SMART WD40_4 872 911 IPR001680 GO:0005515
Bma01g02371 1119 SMART WD40_4 829 867 IPR001680 GO:0005515
Bma01g02371 1119 Gene3D - 851 1119 IPR015943 GO:0005515
Bma01g02371 1119 MobiDBLite consensus disorder prediction 395 509 - -
Bma01g02371 1119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 598 IPR013083 -
Bma01g02371 1119 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 879 910 - -
Bma01g02371 1119 CDD RING-Ubox_PUB 522 564 IPR045210 -
Bma01g02371 1119 Pfam WD domain, G-beta repeat 880 910 IPR001680 GO:0005515
Bma01g02371 1119 ProSiteProfiles Trp-Asp (WD) repeats profile. 879 910 IPR001680 GO:0005515
Bma01g02371 1119 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 638 - -
Bma01g02371 1119 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 637 732 - -
Bma01g02371 1119 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 637 732 - -
Bma01g02371 1119 MobiDBLite consensus disorder prediction 423 458 - -
Bma01g02371 1119 ProSiteProfiles U-box domain profile. 517 592 IPR003613 GO:0004842|GO:0016567
Bma01g02371 1119 SUPERFAMILY RING/U-box 512 590 - -
Bma01g02371 1119 SUPERFAMILY WD40 repeat-like 852 1117 IPR036322 GO:0005515
Bma01g02371 1119 MobiDBLite consensus disorder prediction 477 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02371 - - - hbr:110673768 745.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02371 Bma-Chr1:81364659 Bma07g00500 Bma-Chr7:6167692 1.25E-12 dispersed
Bma01g02371 Bma-Chr1:81364659 Bma14g00501 Bma-Chr14:5627796 3.08E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39