Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02375 ATGGGCGAGGGTTTCATATTCGAAGCGCCCAGCGACGAAGAAGCTATTTACTCTGAGGTCGATACCGGCGACGAAGAACTCGAAGAAGATGAACTTCCTACTTCTCACCGCCGTACTGAATCTCCATGGGAATTCGGTTCCTACTATGGATCAGTCGACGAAGAACATGCGAGGCGCAATACTACCTCCATTGATTCCAAAATCACCAAAGCTCTCAAACAACGTTCTTTACCGTTTGATTCGTCAGTCGTTGACGATAACGAAAGCGTTGAATCGGAATCCGACGGACAAGAAAACTTCATACCAGAAGAAGAAGAAGACGACGACGACGGTGAAGTAGCTTGTGATGCAGGTGATAAGCAGCCCTTTTATGAGTATTTAGATGGAGCTGTTCTCCACGCCAATTCATTTATGGAGCTCCATCTTTCGCGCCCTTTACTTCGTGCTTGCGAAGCTTTGGGCTATTTAAAGCCTACGCCAATTCAGGCGACATGCATACCATTGGCAATTTCTGGGCGTGATATATGTGGGAGTGCCATTACTGGTTCGGGAAAGAAGTGTTTTCTAGTGAACAATCTAATGCTTTTTCTAATGCTCTATCTTCATGCAACTCAAGAGGCAGCCTTAAGGTCAATGCCAGACATTGTTGTGGCAACTCCAGGGCGCATGATAGATCATTTACAAAATTCTATGTCTGTTGATTTGGATGATCTTGCAATTCTTATTCTTGATGAGGCAGATAGACTCTTGGAGGATAATTTTGCAATGGAAACTAAAAGGCTGGTTTCCCTTTGTCCACGGAACAGACAAACAATGCTCTTCTCAGCTACAATGACAGACAAGGTTAATGAGCTTATCAAGCTTTCTTTAACCAATCCCTTGCGCCTCTCAGTTGATCCATCTATGAAACGGCCAGCAGCATTGACTGAGGAAATTGTTAGGATACGGAGAATGCGTGAAGCAAATCAGGAATCAGTTCTTTTTGCATTATGTTCGAAGACATACACTTCTAAAGTTATCATCTTCAGTAAAACAAAACAGGAAGCGCACAGGTTAAAAATTTTATTTGGACTTACTGGCTTTAAAGCTGCCGAGCTTCATGGAAATCTTACCCAAGTCCAGCGTCTTGATGCCTTGGAACTTTTCAGGAACCAGCAAGTTGATTTTCTGATTGCGACAGATGTAGCTGCTCGTGGACTCGACATTAAGGGTGTTCAAACAGTCATAAACTATGCATGCCCTCGTAATCTCACTAGCTACACTCATCGCGTGGGACGAACAGCTAGAATTGGTAGGAAAGGACATGCTGTTACTTTTGTGCTCGATGACGATAGATCCCTTCTAAAATCAATTGCTAAAAAGGCAGGTGCAAAGCTGAAAAGCAGAAATGTAGCTGAACAATCAATAACTAAGTGGTCTCATATAATTGAGCAAATGGAAGATCAAGTTAAAGAAATTTTGCAGGAAGAGAGGTCTATTATTCCTCCTCACAGTTTTTTGTGTTATAGTTATACCCTTTCTGATGCTGTTTCTCTTTCAATGTCATTCAGAGAAGAGAGAGCCCTGAGAAAAGTCGAAATGGAAGTAACAAAGGCAGAAAATATGATTGCTCATAAGGAGGAAATTTTTTCACGCCCTAAAAGAACGTGGTTTGTGACAGAAAAGGAGAAACGGCTTGTAGCAAAGGCAACAAAGGAAAGCTTGGAGAAGACTAACAAGTCTGGGAAGGAGATACTCAGCGCACGAGCAGCTGAGGATTTAAAAGCGAAAGAAAAGAGGAAGCGTGAGCGGGAGAAGAATTTACCTCGGAGGAAGCGGAGAAAATTAGAAGCAGCTAGAGAAATGTTAGAAGAAAATAAGATCGGTGATATGGGAGGCAGTGGAAAAAATGAGGAAAAATCTGGAATGTCGGTTGTTGACCTTGCATATAGACGTGCAAAAGCTGCGAAGGCTGCAAAGAAGGCAGTTGATTCGGGCAAGATTGTGAGGAAGGTAAGTGAATCCAAGCACCATTCTAAAAGAACAAAATCAAGGCCAGAAGAGATGAGAGAGTTGTTTCAGAGTGATATGAATGACAGAAAGCAGAAAAGAAATGGCAGCAGTGCGGGGCGGAAAAAGTCAAAGAATTCATTTAAGAGCAAGTCAAGGTAG 2151 42.58 MGEGFIFEAPSDEEAIYSEVDTGDEELEEDELPTSHRRTESPWEFGSYYGSVDEEHARRNTTSIDSKITKALKQRSLPFDSSVVDDNESVESESDGQENFIPEEEEDDDDGEVACDAGDKQPFYEYLDGAVLHANSFMELHLSRPLLRACEALGYLKPTPIQATCIPLAISGRDICGSAITGSGKKCFLVNNLMLFLMLYLHATQEAALRSMPDIVVATPGRMIDHLQNSMSVDLDDLAILILDEADRLLEDNFAMETKRLVSLCPRNRQTMLFSATMTDKVNELIKLSLTNPLRLSVDPSMKRPAALTEEIVRIRRMREANQESVLFALCSKTYTSKVIIFSKTKQEAHRLKILFGLTGFKAAELHGNLTQVQRLDALELFRNQQVDFLIATDVAARGLDIKGVQTVINYACPRNLTSYTHRVGRTARIGRKGHAVTFVLDDDRSLLKSIAKKAGAKLKSRNVAEQSITKWSHIIEQMEDQVKEILQEERSIIPPHSFLCYSYTLSDAVSLSMSFREERALRKVEMEVTKAENMIAHKEEIFSRPKRTWFVTEKEKRLVAKATKESLEKTNKSGKEILSARAAEDLKAKEKRKREREKNLPRRKRRKLEAAREMLEENKIGDMGGSGKNEEKSGMSVVDLAYRRAKAAKAAKKAVDSGKIVRKVSESKHHSKRTKSRPEEMRELFQSDMNDRKQKRNGSSAGRKKSKNSFKSKSR 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81388523 81394865 + Bma003246.1 Bma01g02375 76892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02375 716 Pfam Helicase conserved C-terminal domain 329 431 IPR001650 -
Bma01g02375 716 CDD SF2_C_DEAD 327 440 - -
Bma01g02375 716 MobiDBLite consensus disorder prediction 646 665 - -
Bma01g02375 716 Pfam DEAD/DEAH box helicase 204 285 IPR011545 GO:0003676|GO:0005524
Bma01g02375 716 SMART ultradead3 154 311 IPR014001 -
Bma01g02375 716 MobiDBLite consensus disorder prediction 86 112 - -
Bma01g02375 716 Coils Coil 522 542 - -
Bma01g02375 716 Gene3D - 302 518 IPR027417 -
Bma01g02375 716 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 242 250 IPR000629 -
Bma01g02375 716 MobiDBLite consensus disorder prediction 570 596 - -
Bma01g02375 716 MobiDBLite consensus disorder prediction 603 627 - -
Bma01g02375 716 MobiDBLite consensus disorder prediction 81 112 - -
Bma01g02375 716 PANTHER BNAA01G17110D PROTEIN 38 187 - -
Bma01g02375 716 PANTHER BNAA01G17110D PROTEIN 517 695 - -
Bma01g02375 716 PANTHER BNAA01G17110D PROTEIN 205 491 - -
Bma01g02375 716 MobiDBLite consensus disorder prediction 14 29 - -
Bma01g02375 716 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 296 IPR014001 -
Bma01g02375 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 451 IPR027417 -
Bma01g02375 716 SMART helicmild6 346 431 IPR001650 -
Bma01g02375 716 MobiDBLite consensus disorder prediction 570 634 - -
Bma01g02375 716 Coils Coil 581 601 - -
Bma01g02375 716 Coils Coil 469 489 - -
Bma01g02375 716 MobiDBLite consensus disorder prediction 1 45 - -
Bma01g02375 716 MobiDBLite consensus disorder prediction 699 716 - -
Bma01g02375 716 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 307 470 IPR001650 -
Bma01g02375 716 PANTHER RNA HELICASE 38 187 - -
Bma01g02375 716 Gene3D - 194 301 IPR027417 -
Bma01g02375 716 PANTHER RNA HELICASE 517 695 - -
Bma01g02375 716 PANTHER RNA HELICASE 205 491 - -
Bma01g02375 716 MobiDBLite consensus disorder prediction 646 716 - -
Bma01g02375 716 MobiDBLite consensus disorder prediction 673 698 - -
Bma01g02375 716 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 135 163 IPR014014 GO:0003724
Bma01g02375 716 Gene3D - 124 193 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02375 K13181 DDX27, DRS1; ATP-dependent RNA helicase DDX27 [EC:3.6.4.13] - zju:107412453 795.038
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02375 Bma-Chr1:81388523 Bma02g01416 Bma-Chr2:56393912 9.80E-55 dispersed
Bma01g02375 Bma-Chr1:81388523 Bma06g00006 Bma-Chr6:207829 8.67E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1136 Blo01g01604 . Bda01g00477 . Bpe02g00342 . . Bma01g02375 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010512 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 0 1 1 0 1 1 1 32