Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02378 ATGGAGACGGAGCTTACCTCCACTGGACGTCCGGACCAGAATGATCAGGCCGTAATGGTGACGGAAACGAAGCCGGAAGAGAAGTTCATTTCGTTCTTTGGCCTTTTTTCTGCTGCCGATTCGGTGGATTATTTCCTGATGTTTTTCGGCAGTCTTGGTGTTTGCATCCATGGTGCTGCGCTTCCTGTTTTCTTTATTTTGTTTGGTAGAATGATCGATTCTTTAGGGCATTTAACCAAAGAACCTCGAAGGTTATCGTCGCAGGTATCGGAGAATGCTCTGTACTTAATCTATCTGGGTTTCATTGTATTCGTGTCGGCTTGGATTGGCGTTGCTTTCTGGATGCAAACTGGGGAAAGACAAACAGCGCGTTTGCGATTGAAGTACCTTCGGGCAGTTTTAAAGAAGGATATTAATTTCTTCGACACTGTAGCAAAGGATTCTAGTATTATTTTTCATCTTTCGAATGACGCAATACTCGTGCAAGATGCGATAGGCGATAAGATGAAACTTGTAATGATAGAACGAAATGAAAACGAGATTGTAATTTCACAGGTTCGTACAGTGTATTCCTTTGTAGGAGAGGATAAAGCAATTGAGGCATTTTCTAAGTCCCTGCAAAAAGCCCTCAAGCTTGGAAAGAAGGGTGGTTTTGCCAAAGGGGTAGGTGTAGGATCTACTTATGGTCTTCTGTTTTGTGCTTGGGCGTTGCTTCTTTGGTATGCCGGCATTCTCGTCATACATCGTGATACAAATGGAGGAAAAGCATTTACAACAATTATCAATGTCATAGTCAGTGGCTTTGCGCTTGGTCAAGCAGCTCCAAGCCTTGCTGCCATTGCAAAAGGGCGAGTAGCTGCAGCCAATATAGTTGGAATGATTGACGACCATTCTAAGTCATCTAAGAGAGTGGAAAATGGTGCGGTGCTGTCAAAAGTAGAAGGGCAAATTGAGTTCTGTGATGTTTGCTTTTCTTATCCTACACGACCTCAAATGGTCCTCGACAAGTTGAATTTTTCGATTAGTGCCGGAAAAACATTTGCAGTTGTAGGCGCCAGTGGGTCAGGAAAGAGCACCATTATTTCTCTGGTGCAACGTTTTTATGAACCATCCTCAGGTAACATACTGTTGGATGGACATGATTTAAGATCAATACAGCTAAAATGGCTGAGAGAACAAATGGGATTGGTCAGTCAAGAGCCAGCATTGTTCGCCACCACAATAGAAAGCAATATTCTGTTTAGTAAAGAAGATGCAGGAATGAACGAAATTGTAGAAGCGGCTAAAGCAGCGAATGCACATTCTTTTATTCAAGAACTACCTGAAGGGTATTATACTCAGGTGGGAGAGGGAGGGACTCAATTTTCCGGTGGGCAAAAGCAAAGAATTGCCATTGCAAGGGCGGTGTTGAGAAATCCTAAGCTTTTACTTCTTGATGAGGCAACTAGTGCTCTTGATGGAGAATCAGAACTTATTGTTCAGCAGTCATTGGATAGAGTTATGTCAAATCGAACGACAATCATCATTGCACATCGGCTGTCCACAATCCAAGATGTCGATACCATCATTGTGTTAAAAAATGGCCAGGTTGTTGAGAGTGGAACCCACGTGGAATTGATGAGCAGGAAAGGAGAATACGCAGCCTTGGTAAGAATGCAAGTAGCAACTGAAAAGGGAAACTTTGAACCAATGTCTCCAGCAAGTTCCAGGCAGTCCAGCTTCCAAGAATCCCTCACTAGCCAGAACTATCTACCTGAGTTCAAGCCAATTATAATAACTGATTTGGAGCCAAGCAGTCAAAACATGTCCTTGCCAAACTCTTCCTCTGCTCCGTCAATCTGGGAGATAGTAAAGTTAAATGCACCAGAGTGGCCATGCGCACTACTCGGGTCAGTTGGAGCCATTCTTGCAGGAATCGAAGCTCCTTTATTCGCCCTTGGAATCACACATGTTTTGACGGCATTTTATTCTCCTCACAACGCCCAAATCAAAGTAGAAGTTCAACGAGTAGCTCTTCTATTTGTTGGAGTTGGCATTGTCACTATTCCTATATATCTGTTACAACATTACTACTATACATTGATGGGAGAACGGCTCACTGCTCGTGTTCGCCTGAAGATGTTCTCAGCTATCCTATCAAATGAAATCGGGTGGTTTGATTTTGAAGACAACAACACTGGATCGTTGACATCAATTTTAGCAGCAGATGCAACATTAGTAAGAAGTGCTCTTGCAGATCGACTATCTACGATTGTGCAGAACATAGCCCTCACTGTCTCCGCCCTTGTTATTGCCTTCACATTAAGCTGGCACATAGCAATTGTCGTTGTAGCCTCCCTACCCCTTCTTATTGGAGCCTCAATTGCCGAGCAACTGTTTCTCAAGGGATTTGGAGGGGACTACAGTCGTGCCTACAATAGAGCAACTTCCATTGGTCGGGAAGCTATTGTTAACATTCGTACAGTCGCTGCATTTGGTGCTGAAGATCGGATATTAACCCAGTTTGCCTCTGAACTGAGCCAACCAAACAAGCAAGCTCTGTTGAGAGGCCACATATCAGGCTTTGCCTATGGCTTAACTCAGCTATTGGCCTTCTGTTCCTACGCACTTGCCCTTTGGTATGCATCCGTTCTGATCAACCATAAAGACTCGAATTTTGGAGACATAATGAAGTCTTTTATGGTTTTGATAATCACATCTCTGTCCATAGCAGAAACACTTGCTCTCACCCCACATATTGTGAAGGGTACACAAGCACTACGATCAGTTTTCGGTATTCTCCATAGAAAATCTGCTATTGACCCAAACAATCATTCGTCACAGCTTATAATTGAAATCAAAGGAGATATTGAGTTTCGAAATGTGAGTTTCAAGTACCCTGCAAGGCCAGATGTCTCCATTTTTGAGGATTTGAGCTTTAAAGTGTCCCCAGGAAAGAGTCTTGCTGTCGTGGGCCAAAGTGGGTCAGGAAAGAGCACAGTGATTTCTCTGGTCATGAGGTTTTACGATCCAAATTCAGGATTCATCATGATCGACGGGAGCAACATTAGACTCATGAATTTAAAAGCGCTGAGAAAGAAAATTGGTTTAGTTCAGCAAGAGCCAGCACTATTCTCCACAACAATCTACGAAAATATCAAATACGGGAAAGACGAAGCGTCGGAAATCGAAATAATGAAAGCAGCGAAAGCAGCAAACGCGCACGATTTCATCTGCAGAATGCCCGACGGTTACGACACCAGCGTCGGCGAAAGAGGAGTTCAACTATCGGGAGGACAGAAGCAGAGAGTCGCAATCGCCCGAGCCATCCTAAAAGATCCATCGATTCTTCTTCTAGACGAAGCAACGAGCGCACTCGACGCGGCCTCCGAGAATCTGGTACAGGAGGCTCTCAATTCACTCATGGAGGGGCGAACCACCATTATAGTGGCGCACAGGTTGACGACGGTTCGAAACGCAGATAGAATTGGGGTTTTGAAGAATGGCAGAATGGCTGAAATGGGAAGCCATGAGCAGCTCACGGGACAGCCTACGAGCTTATATAAACAATTAATCAGTCTACAGCGGGCACATGTTATTGATTAA 3585 44.1 METELTSTGRPDQNDQAVMVTETKPEEKFISFFGLFSAADSVDYFLMFFGSLGVCIHGAALPVFFILFGRMIDSLGHLTKEPRRLSSQVSENALYLIYLGFIVFVSAWIGVAFWMQTGERQTARLRLKYLRAVLKKDINFFDTVAKDSSIIFHLSNDAILVQDAIGDKMKLVMIERNENEIVISQVRTVYSFVGEDKAIEAFSKSLQKALKLGKKGGFAKGVGVGSTYGLLFCAWALLLWYAGILVIHRDTNGGKAFTTIINVIVSGFALGQAAPSLAAIAKGRVAAANIVGMIDDHSKSSKRVENGAVLSKVEGQIEFCDVCFSYPTRPQMVLDKLNFSISAGKTFAVVGASGSGKSTIISLVQRFYEPSSGNILLDGHDLRSIQLKWLREQMGLVSQEPALFATTIESNILFSKEDAGMNEIVEAAKAANAHSFIQELPEGYYTQVGEGGTQFSGGQKQRIAIARAVLRNPKLLLLDEATSALDGESELIVQQSLDRVMSNRTTIIIAHRLSTIQDVDTIIVLKNGQVVESGTHVELMSRKGEYAALVRMQVATEKGNFEPMSPASSRQSSFQESLTSQNYLPEFKPIIITDLEPSSQNMSLPNSSSAPSIWEIVKLNAPEWPCALLGSVGAILAGIEAPLFALGITHVLTAFYSPHNAQIKVEVQRVALLFVGVGIVTIPIYLLQHYYYTLMGERLTARVRLKMFSAILSNEIGWFDFEDNNTGSLTSILAADATLVRSALADRLSTIVQNIALTVSALVIAFTLSWHIAIVVVASLPLLIGASIAEQLFLKGFGGDYSRAYNRATSIGREAIVNIRTVAAFGAEDRILTQFASELSQPNKQALLRGHISGFAYGLTQLLAFCSYALALWYASVLINHKDSNFGDIMKSFMVLIITSLSIAETLALTPHIVKGTQALRSVFGILHRKSAIDPNNHSSQLIIEIKGDIEFRNVSFKYPARPDVSIFEDLSFKVSPGKSLAVVGQSGSGKSTVISLVMRFYDPNSGFIMIDGSNIRLMNLKALRKKIGLVQQEPALFSTTIYENIKYGKDEASEIEIMKAAKAANAHDFICRMPDGYDTSVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDAASENLVQEALNSLMEGRTTIIVAHRLTTVRNADRIGVLKNGRMAEMGSHEQLTGQPTSLYKQLISLQRAHVID 1194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81405532 81410519 + Bma003249.1 Bma01g02378 76895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02378 1194 Pfam ABC transporter transmembrane region 182 266 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma01g02378 1194 Pfam ABC transporter transmembrane region 632 901 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma01g02378 1194 Pfam ABC transporter transmembrane region 50 171 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma01g02378 1194 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 370 511 - -
Bma01g02378 1194 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 31 170 - -
Bma01g02378 1194 CDD ABC_MTABC3_MDL1_MDL2 317 553 - -
Bma01g02378 1194 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 495 1188 IPR039421 -
Bma01g02378 1194 ProSitePatterns ABC transporters family signature. 1089 1103 IPR017871 GO:0005524
Bma01g02378 1194 SUPERFAMILY ABC transporter transmembrane region 617 929 IPR036640 GO:0005524|GO:0016021
Bma01g02378 1194 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 495 1188 - -
Bma01g02378 1194 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 282 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma01g02378 1194 Gene3D ABC transporter type 1, transmembrane domain 181 920 IPR036640 GO:0005524|GO:0016021
Bma01g02378 1194 Pfam ABC transporter 969 1117 IPR003439 GO:0005524
Bma01g02378 1194 ProSiteProfiles POLO box domain profile. 144 214 IPR000959 GO:0005515
Bma01g02378 1194 CDD ABC_MTABC3_MDL1_MDL2 950 1188 - -
Bma01g02378 1194 Pfam ABC transporter 334 483 IPR003439 GO:0005524
Bma01g02378 1194 Gene3D - 315 578 IPR027417 -
Bma01g02378 1194 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 179 417 IPR039421 -
Bma01g02378 1194 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 370 511 IPR039421 -
Bma01g02378 1194 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 31 170 IPR039421 -
Bma01g02378 1194 SUPERFAMILY ABC transporter transmembrane region 35 290 IPR036640 GO:0005524|GO:0016021
Bma01g02378 1194 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 179 417 - -
Bma01g02378 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 940 1188 IPR027417 -
Bma01g02378 1194 ProSitePatterns ABC transporters family signature. 455 469 IPR017871 GO:0005524
Bma01g02378 1194 Gene3D ABC transporter type 1, transmembrane domain 26 175 IPR036640 GO:0005524|GO:0016021
Bma01g02378 1194 CDD ABC_6TM_Pgp_ABCB1_D2_like 618 933 - -
Bma01g02378 1194 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 317 552 IPR003439 GO:0005524
Bma01g02378 1194 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 290 - -
Bma01g02378 1194 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 628 915 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma01g02378 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 553 IPR027417 -
Bma01g02378 1194 SMART AAA_5 977 1163 IPR003593 -
Bma01g02378 1194 SMART AAA_5 343 529 IPR003593 -
Bma01g02378 1194 Gene3D - 941 1192 IPR027417 -
Bma01g02378 1194 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 950 1186 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02378 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - qsu:112013271 1664.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02378 Bma-Chr1:81405532 Bma04g01624 Bma-Chr4:52180902 4.56E-133 dispersed
Bma11g00049 Bma-Chr11:598000 Bma01g02378 Bma-Chr1:81405532 1.64E-59 dispersed
Bma11g00189 Bma-Chr11:1704071 Bma01g02378 Bma-Chr1:81405532 6.37E-08 dispersed
Bma13g00540 Bma-Chr13:11383806 Bma01g02378 Bma-Chr1:81405532 3.06E-40 dispersed
Bma01g02378 Bma-Chr1:81405532 Bma13g00320 Bma-Chr13:5801115 1.70E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1146 Blo01g01605 . Bda01g00476 . . . . Bma01g02378 . . . Cma09g00095 . . . . . . . . . . . . . . . . . . . . Cone7ag1900 . . . . . . . . . . . . . . . . Cmo09g00092 . . . Car09g00083 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013207 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 27