Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02382 ATGAGAGACTTGCTTTATGAAAAGTCGCAATATTTGGTTGTGGGAGGAATATCTTGTTCATCTGGCTCTGCGATTTTCAGCATGAAATGTCGTTGTTCTTTGCTATTTGTTTCTTCATTATGGGTCGCAATGTGCATGGCCATAGAAGGGCTGGTTAAGCTGCCAAGAAATGAAACAGTCCCTGCTGTTATCGTGTTTGGAGATTCCATTGTTGATACAGGCAACAACAACAATCTTCTCTCTCTCTCTAAGTGCAATTTCCCTCCCTATGGCAGAGATTTCTTTGGTGGAATACCCAGTGGAAGATTTTCCAATGGAAAGGTTCCCTCAGACCTCATAGCTGAAGAACTCGGAATCAAAGAGCTGTTACCACCATACATGGATCCCAATCTGCGATCTATTGATCTTCTTACTGGTGTAAGCTTTGCTTCAGGTGGTTCAGGCTATGATCCTTTGACCCCAGCATTGTCGGTCACGTCATTATCTGAGCAGTTGACAGAGTTCAAGGAATACATTGGGCGATTGAAAAGAATAGTTGGAGAAGAGAGAACAAGTTTCATACTGGCCAAAAGCATAGTTGTTATTATTTCAGGCAGTAATGATATTGGAAATACGTATTTTGGTTTGGGAATTAGAAGATTGGAGTACGATATCCCTTCTTACACTGATCTTATGCTCAACTCCGCCGCCTCTTTCGTCAAGGAACTATATAAACTCGGGGCGAGAAAAATAGGAGTGTTCAGTACTCCACCAATAGGATGTGTTCCAGCTTTAAGAACTCTAGGCGGAGGCATTCTGAGACGATGTTCAGAAGAAGCAAACGAAGCTGCAAAGCTCTTCAACTCCAAGCTTTCTTCTCAAATCCATTTGCTGAGACCAAATCTCCCCCTTGCCAAGATCGTTTATGTCGACATTTATAACCCATTTCTGGATATCATCAAAAACCCGAGAAAATTCGCAGGGTTTGAAATTGCAAATAAAGGGTGCTGTGGAACTGGGACATTGGAGGCAGCAGTCCTGTGCAACGGGCTTGAACCAGAAACTTGCAGAGACGACAGCAAGTATGTGTTTTGGGATAGCTTTCATCCTACTGAAAGAGTCTACAAAATCCTCGTTTCTCAGCTCCTGAATAAATACGTCAACAACTTCTTCTGA 1155 42.6 MRDLLYEKSQYLVVGGISCSSGSAIFSMKCRCSLLFVSSLWVAMCMAIEGLVKLPRNETVPAVIVFGDSIVDTGNNNNLLSLSKCNFPPYGRDFFGGIPSGRFSNGKVPSDLIAEELGIKELLPPYMDPNLRSIDLLTGVSFASGGSGYDPLTPALSVTSLSEQLTEFKEYIGRLKRIVGEERTSFILAKSIVVIISGSNDIGNTYFGLGIRRLEYDIPSYTDLMLNSAASFVKELYKLGARKIGVFSTPPIGCVPALRTLGGGILRRCSEEANEAAKLFNSKLSSQIHLLRPNLPLAKIVYVDIYNPFLDIIKNPRKFAGFEIANKGCCGTGTLEAAVLCNGLEPETCRDDSKYVFWDSFHPTERVYKILVSQLLNKYVNNFF 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81438679 81441181 + Bma003253.1 Bma01g02382 76899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02382 384 Gene3D SGNH hydrolase 52 381 IPR036514 -
Bma01g02382 384 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Bma01g02382 384 CDD SGNH_plant_lipase_like 61 379 IPR035669 -
Bma01g02382 384 Pfam GDSL-like Lipase/Acylhydrolase 63 373 IPR001087 GO:0016788
Bma01g02382 384 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 37 380 - -
Bma01g02382 384 SUPERFAMILY SGNH hydrolase 63 379 - -
Bma01g02382 384 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 63 74 IPR008265 GO:0006629|GO:0016298
Bma01g02382 384 PANTHER GDSL ESTERASE/LIPASE EXL3 37 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02382 - - - qsu:111991232 473.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02382 Bma-Chr1:81438679 Bma14g00371 Bma-Chr14:4493599 4.09E-120 dispersed
Bma01g02382 Bma-Chr1:81438679 Bma01g02456 Bma-Chr1:82154533 5.06E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1155 . . . . . . . Bma01g02382 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001408 2 2 3 2 2 2 3 1 2 2 1 3 2 2 2 2 2 5 3 1 2 4 4 2 3 1 2 2 2 7 73