Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02387 ATGGCCTCCGTAACCTCAGCAGCAGTCGTCATCCCCTCGTTCAGCGGCCTTAAAGCCTCTGGCTTCGCCGGAAAAGCTACCGTCATCATTAAGGCCTCGCCCGTACCTACTCCAAGGCTCGGTGTTAAGGCCTCTCTGAAAGACATCGGCGTCGCAGTGGTAGCCACTGCCGCAAGCGCCGCGCTTGCAAGCAATGCATTGGCCGCAACAGTTCTTCTGGGATCTGACAGCGGAGAGTTGGCTTTCGTTCCAAGCAATTTCTCAGTAGCCTCTGGGGAGACAATCGTGTTCAAAAACAACGCCGGGTTTCCTCACAACGTCGTGTTCGACGAAGACGAGATACCCAGCGGAGTAAACGCGTCTAAAATCTCGATGAACGAGGAAGATCTTCTCAACGCTCCCGGCGAGCAATATACGGTGACTCTGACTGAGAAAGGTAGCTACACTTTCTATTGCTCTCCTCATCAGGGAGCCGGAATGGTCGGAAAAGTGACAGTCAACTAA 504 53.57 MASVTSAAVVIPSFSGLKASGFAGKATVIIKASPVPTPRLGVKASLKDIGVAVVATAASAALASNALAATVLLGSDSGELAFVPSNFSVASGETIVFKNNAGFPHNVVFDEDEIPSGVNASKISMNEEDLLNAPGEQYTVTLTEKGSYTFYCSPHQGAGMVGKVTVN 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81455950 81456453 - Bma003258.1 Bma01g02387 76904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02387 167 Gene3D - 70 167 IPR008972 -
Bma01g02387 167 SUPERFAMILY Cupredoxins 67 167 IPR008972 -
Bma01g02387 167 PANTHER PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED 1 167 - -
Bma01g02387 167 Pfam Copper binding proteins, plastocyanin/azurin family 70 167 IPR000923 GO:0005507|GO:0009055
Bma01g02387 167 PRINTS Plastocyanin signature 74 93 IPR002387 GO:0005507|GO:0009055
Bma01g02387 167 PRINTS Plastocyanin signature 97 115 IPR002387 GO:0005507|GO:0009055
Bma01g02387 167 PRINTS Plastocyanin signature 146 165 IPR002387 GO:0005507|GO:0009055
Bma01g02387 167 PANTHER PLASTOCYANIN 1 167 - -
Bma01g02387 167 PRINTS Type I copper blue protein family signature 144 158 IPR001235 GO:0005507|GO:0009055
Bma01g02387 167 PRINTS Type I copper blue protein family signature 88 101 IPR001235 GO:0005507|GO:0009055
Bma01g02387 167 PRINTS Type I copper blue protein family signature 103 118 IPR001235 GO:0005507|GO:0009055
Bma01g02387 167 TIGRFAM cyanin_plasto: plastocyanin 70 167 IPR002387 GO:0005507|GO:0009055
Bma01g02387 167 ProSitePatterns Type-1 copper (blue) proteins signature. 146 160 IPR028871 -
Bma01g02387 167 CDD Plastocyanin 71 167 IPR002387 GO:0005507|GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02387 K02638 petE; plastocyanin - ini:109184511 243.047
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02387 Bma04g00264 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02387 Bma-Chr1:81455950 Bma04g00264 Bma-Chr4:2184193 3.36E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g157 Blo01g01613 . . . Bpe02g00333 Bpe04g00263 Bma04g00264 Bma01g02387 . . . Cma09g00082 . . . Cpe06g00046 . . . . . . . . . . . . . . . . . . . Lsi04g01781 . Chy04g00389 . . . . . . . . . . . Cmo09g00081 . . . Car09g00071 . . . . . . . . . Cla05g01595 Cam05g1706 Cec05g1706 Cco05g1762 Clacu05g1693 Cmu05g1582 Cre05g1699 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011843 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 0 1 1 1 2 1 1 30