Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02388 TTCTGTGCTGTTTCGTCAATGGAAGACTTGGAGAGTAGTAGTAGTAGTAGCAGACCGGTGGATTCTCTGCCTCGGAGTTGGAAACGGAGACAGAAGGCTGATGTTTACCAAGAAATTCTTCATCGACTCAAGAACTTGAATGAGGAAGTGACAAAAAATGCCGAGTTCGAGACTAAGCTTTGGTCGCATTTCTCGAGACTTCCTGTCAGGTATGCAGTGGACGTGAACGTCGACAGTGCTCTAGATGTTCTCATGCACCAGCGACTACTGTTGATGGCACGTGATCCCGCTACTAGACCAGCCATTGAAGTTCGTCTGGTGCAGGTTCAGTCTACTCGTGGTGGAAACTATGACGAGTCTGTTCATTCAGACTCAATAAGACAGAATGCTCGTTGTTCAGATCGTCCCACTAAAAAGAGGCATGATTACTATCCTCCCCCAGCCTTCAGTTCATTAGCAGGTTGCGAAATTGGTTTTGATATCAAGTATTTACATGTTCAAGATCAAGAGACCACATTTCCCAGGTCAATGCATGAGATTACAATTTCAACAGTAGACAAGCCAAAGCTCCTTAGCCAGTTGACAACCTTAATTTCCGAGTTAGGGCTTAATATTCAAGAAGCACATGCATTTTCCACCGTGGATGGGTATTCTTTGGATGTTTTTGTAGTTGATGGTTGGGCACTAGAGGGGACCAAGCAGCTTAAAGATTTATTGATCAAAGAAATATCTAAGGTAGAGGTAGTTGCATATTCCTTGTTGAAGCATCCATTATGTTCTCATTTAGAAAACCACGTTGAAGCTGGAGTCGAGTTCAATTCAACTCATGTAAACATTCCTATTGATGGAGCTGATGTATGGGATATTGATGTCAATTTGTTGACATTTGAACAGAAAATTGCATCTGGATCTTGTAGCGACTTATACAAAGGTTATTACTGTGGTCAAGATGTTGCAATAAAACTTCTCAGGGTCGAAAATCTATATGAAATTGCAGTGAAGGAATTTATTCAAGAAGTCAATATTATGAGAAAAGTGCGACACAAGAATGTTGTTCAATTCATTGGGGCATGCACCAGATCTCCAAGCTTGTGCATTATCACAGAATATATGTCGGGTGGAAGCATGTACGACTTTTTGCGCAGACACAAGGGTGTTTTGACACTCTCATCTTTGGTCAGAGTAGCAATTGAAGTATCCAAGGGCATGAATTATTTGCATCAAAATAATATAATGCATAGGGATCTGAAAGCTGCCAACCTTTTGGTGGATGAAGATGGTGTAGTCAAACTTGCTGATTTTGGTGTCGCTAGATTGCAAGTTCAATCAGGTGTTATGACTGCAGAAACAGGAACATACCGCTGGATGGCTCCCGAGATTATTGAGCACAAGCCATATGACCATAAAGCTGATGTTTTTAGCTTTGGCATTGTATTGTGGGAACTGCTAACATGCAAGCTTCCCTATCAGGACTTGACCCCATTACAGGCAGCCGTCGGAGTAGTTCAGAAGGGTCTAAGACCCATTATTCCTGAAGGTACTCACCCAATGATGGTGAATTTAATGGAGAAATGTTGGCAGCAGGACCCGTTCTTGAGACCAGAATTCTTTCAGATTACTGAACTTTTACTGCATTTGTCGAAGATGGTAAAGTTTCTAACTCGTCTAGTGCTTTTTCTTTTTCAAACACTCACTTTTAGATTTTTGAGAATGCTTGGACAGATTGCAGATGAAGATAGTACTAATGGCAGTCGTATTGAAGATCACTAG 1770 41.47 FCAVSSMEDLESSSSSSRPVDSLPRSWKRRQKADVYQEILHRLKNLNEEVTKNAEFETKLWSHFSRLPVRYAVDVNVDSALDVLMHQRLLLMARDPATRPAIEVRLVQVQSTRGGNYDESVHSDSIRQNARCSDRPTKKRHDYYPPPAFSSLAGCEIGFDIKYLHVQDQETTFPRSMHEITISTVDKPKLLSQLTTLISELGLNIQEAHAFSTVDGYSLDVFVVDGWALEGTKQLKDLLIKEISKVEVVAYSLLKHPLCSHLENHVEAGVEFNSTHVNIPIDGADVWDIDVNLLTFEQKIASGSCSDLYKGYYCGQDVAIKLLRVENLYEIAVKEFIQEVNIMRKVRHKNVVQFIGACTRSPSLCIITEYMSGGSMYDFLRRHKGVLTLSSLVRVAIEVSKGMNYLHQNNIMHRDLKAANLLVDEDGVVKLADFGVARLQVQSGVMTAETGTYRWMAPEIIEHKPYDHKADVFSFGIVLWELLTCKLPYQDLTPLQAAVGVVQKGLRPIIPEGTHPMMVNLMEKCWQQDPFLRPEFFQITELLLHLSKMVKFLTRLVLFLFQTLTFRFLRMLGQIADEDSTNGSRIEDH 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81458040 81464353 + Bma003259.1 Bma01g02388 76905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02388 589 Gene3D - 176 251 - -
Bma01g02388 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Bma01g02388 589 SMART serkin_6 294 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02388 589 SUPERFAMILY ACT-like 176 243 IPR045865 -
Bma01g02388 589 ProSiteProfiles Protein kinase domain profile. 294 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02388 589 Coils Coil 33 53 - -
Bma01g02388 589 MobiDBLite consensus disorder prediction 115 140 - -
Bma01g02388 589 Gene3D Phosphorylase Kinase; domain 1 284 372 - -
Bma01g02388 589 ProSiteProfiles ACT domain profile. 179 261 IPR002912 -
Bma01g02388 589 MobiDBLite consensus disorder prediction 124 140 - -
Bma01g02388 589 Gene3D Transferase(Phosphotransferase) domain 1 373 555 - -
Bma01g02388 589 MobiDBLite consensus disorder prediction 7 22 - -
Bma01g02388 589 SUPERFAMILY Protein kinase-like (PK-like) 285 564 IPR011009 -
Bma01g02388 589 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 25 552 - -
Bma01g02388 589 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 25 552 - -
Bma01g02388 589 MobiDBLite consensus disorder prediction 1 24 - -
Bma01g02388 589 CDD STKc_MAP3K-like 300 543 - -
Bma01g02388 589 PRINTS Tyrosine kinase catalytic domain signature 470 492 IPR001245 GO:0004672|GO:0006468
Bma01g02388 589 PRINTS Tyrosine kinase catalytic domain signature 405 423 IPR001245 GO:0004672|GO:0006468
Bma01g02388 589 PRINTS Tyrosine kinase catalytic domain signature 451 461 IPR001245 GO:0004672|GO:0006468
Bma01g02388 589 PRINTS Tyrosine kinase catalytic domain signature 368 381 IPR001245 GO:0004672|GO:0006468
Bma01g02388 589 PRINTS Tyrosine kinase catalytic domain signature 514 536 IPR001245 GO:0004672|GO:0006468
Bma01g02388 589 Pfam Protein tyrosine and serine/threonine kinase 294 543 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02388 Bma-Chr1:81458040 Bma08g00742 Bma-Chr8:43584343 0 dispersed
Bma02g00338 Bma-Chr2:5462517 Bma01g02388 Bma-Chr1:81458040 2.46E-43 dispersed
Bma01g02388 Bma-Chr1:81458040 Bma06g00081 Bma-Chr6:1282980 1.21E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66301 PF07714 PK_Tyr_Ser-Thr 1.10E-70 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02388 - - tcc:18591636 673.7