Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02389 ATGAACACAAAGTTCATGATTCCTGTGATTGGGGGGAAGGAGCTAGACCTGCATGTATTATATTTGGAGGTCACCAGAAGGGGCGGTTTTGAAAAGGTAGTTGCAGAGAAAAAATGGAGGGAAGTGGGCAATATATTTAGATTCTCCCCTACAACAACAAGTGCTTCTTTTGTGTTGAGGAAACACTACTTCAGTCTTCTCTACCATTATGAACAGGTTTACTTCTTCGAGAGACAAGGCGTTCTCACTACTCCAAGAGGTTCCTCTTTCCTCCCTAATACCCTTTTTGCGCCTTCTGAATCTCTCTCTCTCTCTCTAGCAGCTGCATTTACTTTTAGTGACCCTTCATGCATAAATGAGTTGGCTATTGTGGAGTACACTCCAAAGAAGACGAATTCGCCTGAACCAACTGCAGAAGTTATTGGAACAATTGAAGGGAAGTTCGACTGTGGTTATCTTGTGTCTGCAAAAGTGGGTTCAGAGATTCTCAGAGGAGTGCTTTACCATCCAGAAGAGCTAGCTATATTATCACCGCCCTCATTTCCACATTTCAACAATGTACAAGCACTCGTTCCCTACAAACATGGCGGACAGTACCATTCCAGTGGCCGGAGGAGGAGGAGGAGCCGGAGAAAGGGAGACCCGAACTACCCAAAACCTAACAGAAGTGGGTATAACTTCTTTTTCGCAGAAAAACATTACAAACTCAAGTCGCTGTATCCAAATAGAGAGAGGGAGTTTACAAAGATGATAGGAGAGTCTTGGAGCAATCTCAGCCCCGATGAAGGATGGTTAGATCTTCTTTTTGTTTACCAAAACATAGGGTTGAAAGATAAGGAAAGATACAAGAGGGAATTGAAAGAGTACAAAGAGAGGCAGACACTGGGAGTTAATGAATGA 900 43.33 MNTKFMIPVIGGKELDLHVLYLEVTRRGGFEKVVAEKKWREVGNIFRFSPTTTSASFVLRKHYFSLLYHYEQVYFFERQGVLTTPRGSSFLPNTLFAPSESLSLSLAAAFTFSDPSCINELAIVEYTPKKTNSPEPTAEVIGTIEGKFDCGYLVSAKVGSEILRGVLYHPEELAILSPPSFPHFNNVQALVPYKHGGQYHSSGRRRRRSRRKGDPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWSNLSPDEGWLDLLFVYQNIGLKDKERYKRELKEYKERQTLGVNE 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81465823 81467191 - Bma003260.1 Bma01g02389 76906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02389 299 CDD HMGB-UBF_HMG-box 218 287 - -
Bma01g02389 299 MobiDBLite consensus disorder prediction 195 222 - -
Bma01g02389 299 ProSiteProfiles ARID domain profile. 1 75 IPR001606 GO:0003677
Bma01g02389 299 SMART ARID_2 2 71 - -
Bma01g02389 299 Pfam ARID/BRIGHT DNA binding domain 7 71 IPR001606 GO:0003677
Bma01g02389 299 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 295 - -
Bma01g02389 299 MobiDBLite consensus disorder prediction 199 213 - -
Bma01g02389 299 SMART bright_3 1 76 IPR001606 GO:0003677
Bma01g02389 299 Gene3D High mobility group box domain 202 296 IPR036910 -
Bma01g02389 299 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 218 290 IPR009071 -
Bma01g02389 299 SUPERFAMILY HMG-box 215 292 IPR036910 -
Bma01g02389 299 CDD ARID_HMGB9-like 1 71 IPR045303 GO:0003677
Bma01g02389 299 SUPERFAMILY ARID-like 2 84 IPR036431 GO:0003677
Bma01g02389 299 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 295 - -
Bma01g02389 299 Gene3D - 1 82 IPR036431 GO:0003677
Bma01g02389 299 Pfam HMG (high mobility group) box 218 290 IPR009071 -
Bma01g02389 299 SMART hmgende2 217 291 IPR009071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02389 Bma-Chr1:81465823 Bma13g01143 Bma-Chr13:44620708 7.60E-65 dispersed
Bma01g02389 Bma-Chr1:81465823 Bma05g01290 Bma-Chr5:52272695 1.54E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56802 PF00505 HMG_box 2.50E-06 CL0114 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02389 - - cpep:111797158 371.703