Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02389 ATGAACACAAAGTTCATGATTCCTGTGATTGGGGGGAAGGAGCTAGACCTGCATGTATTATATTTGGAGGTCACCAGAAGGGGCGGTTTTGAAAAGGTAGTTGCAGAGAAAAAATGGAGGGAAGTGGGCAATATATTTAGATTCTCCCCTACAACAACAAGTGCTTCTTTTGTGTTGAGGAAACACTACTTCAGTCTTCTCTACCATTATGAACAGGTTTACTTCTTCGAGAGACAAGGCGTTCTCACTACTCCAAGAGGTTCCTCTTTCCTCCCTAATACCCTTTTTGCGCCTTCTGAATCTCTCTCTCTCTCTCTAGCAGCTGCATTTACTTTTAGTGACCCTTCATGCATAAATGAGTTGGCTATTGTGGAGTACACTCCAAAGAAGACGAATTCGCCTGAACCAACTGCAGAAGTTATTGGAACAATTGAAGGGAAGTTCGACTGTGGTTATCTTGTGTCTGCAAAAGTGGGTTCAGAGATTCTCAGAGGAGTGCTTTACCATCCAGAAGAGCTAGCTATATTATCACCGCCCTCATTTCCACATTTCAACAATGTACAAGCACTCGTTCCCTACAAACATGGCGGACAGTACCATTCCAGTGGCCGGAGGAGGAGGAGGAGCCGGAGAAAGGGAGACCCGAACTACCCAAAACCTAACAGAAGTGGGTATAACTTCTTTTTCGCAGAAAAACATTACAAACTCAAGTCGCTGTATCCAAATAGAGAGAGGGAGTTTACAAAGATGATAGGAGAGTCTTGGAGCAATCTCAGCCCCGATGAAGGATGGTTAGATCTTCTTTTTGTTTACCAAAACATAGGGTTGAAAGATAAGGAAAGATACAAGAGGGAATTGAAAGAGTACAAAGAGAGGCAGACACTGGGAGTTAATGAATGA 900 43.33 MNTKFMIPVIGGKELDLHVLYLEVTRRGGFEKVVAEKKWREVGNIFRFSPTTTSASFVLRKHYFSLLYHYEQVYFFERQGVLTTPRGSSFLPNTLFAPSESLSLSLAAAFTFSDPSCINELAIVEYTPKKTNSPEPTAEVIGTIEGKFDCGYLVSAKVGSEILRGVLYHPEELAILSPPSFPHFNNVQALVPYKHGGQYHSSGRRRRRSRRKGDPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWSNLSPDEGWLDLLFVYQNIGLKDKERYKRELKEYKERQTLGVNE 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81465823 81467191 - Bma003260.1 Bma01g02389 76906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02389 299 CDD HMGB-UBF_HMG-box 218 287 - -
Bma01g02389 299 MobiDBLite consensus disorder prediction 195 222 - -
Bma01g02389 299 ProSiteProfiles ARID domain profile. 1 75 IPR001606 GO:0003677
Bma01g02389 299 SMART ARID_2 2 71 - -
Bma01g02389 299 Pfam ARID/BRIGHT DNA binding domain 7 71 IPR001606 GO:0003677
Bma01g02389 299 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 295 - -
Bma01g02389 299 MobiDBLite consensus disorder prediction 199 213 - -
Bma01g02389 299 SMART bright_3 1 76 IPR001606 GO:0003677
Bma01g02389 299 Gene3D High mobility group box domain 202 296 IPR036910 -
Bma01g02389 299 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 218 290 IPR009071 -
Bma01g02389 299 SUPERFAMILY HMG-box 215 292 IPR036910 -
Bma01g02389 299 CDD ARID_HMGB9-like 1 71 IPR045303 GO:0003677
Bma01g02389 299 SUPERFAMILY ARID-like 2 84 IPR036431 GO:0003677
Bma01g02389 299 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 295 - -
Bma01g02389 299 Gene3D - 1 82 IPR036431 GO:0003677
Bma01g02389 299 Pfam HMG (high mobility group) box 218 290 IPR009071 -
Bma01g02389 299 SMART hmgende2 217 291 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02389 - - - cpep:111797158 371.703
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02389 Bma-Chr1:81465823 Bma13g01143 Bma-Chr13:44620708 7.60E-65 dispersed
Bma01g02389 Bma-Chr1:81465823 Bma05g01290 Bma-Chr5:52272695 1.54E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g01290 BCT 27 340 ARID Transcription Factor Family AT1G04880 60.8 1.6e-98 356.7
Bma04g01053 BCT 27 272 ARID Transcription Factor Family AT1G04880 55.5 2.1e-69 260.0
Bma01g00689 . 151 430 ARID Transcription Factor Family AT1G20910 66.4 1.2e-100 363.6
Bma15g00913 . 37 329 ARID Transcription Factor Family AT1G20910 53.8 3.0e-80 295.8
Bma01g02389 . 1 295 ARID Transcription Factor Family AT1G76110 59.4 8.9e-89 323.9
Bma01g00689 . 119 460 ARID Transcription Factor Family AT1G76510 67.0 2.4e-123 439.1
Bma15g00913 . 14 359 ARID Transcription Factor Family AT1G76510 55.7 4.5e-101 365.2
Bma13g01143 . 42 324 ARID Transcription Factor Family AT3G13350 52.2 1.7e-81 299.7
Bma10g00669 . 2 801 ARID Transcription Factor Family AT3G43240 55.3 6.2e-252 867.1
Bma10g00710 . 1 774 ARID Transcription Factor Family AT3G43240 56.6 6.2e-252 867.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56802 PF00505 HMG_box 2.50E-06 CL0114 Bma TR