Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02393 ATGGCATCATTTGTTGGTGCGATGGCCATTGCTGATTTAGTCAAAACAACCTTAGGCCCAAAAGGAATGGACAAAATTTTGCAATCTACTGGCAGAGGACGTTCTGTGACTGTCACAAATGATGGGGCCACCATTTTAAAGTCTCTTCATATTGACAACCCAGCTGCTAAAGTTCTAGTTGTTATAGACATTTCAAAAGTTCAAGATGACGAAGTGGGTGATGGAACAACCTCTGTAGTTGTCTTGGCGGGAGAACTTTTAAGAGAAGCAGAGAAGCTGGTTGCAGCTAAGATTCATCCAATGACAATCATATCAGGCTATAGAATGGCGGTAGAATGCGCACGCAATGCACTGTTGGAAAAAGTCGTTGATAACAAAGACAATTCAGAGATGTTCAAATCAGACTTGATGAAGATTGCGATGACTACCTTGAGCTCTAAAATTCTCTCACAGGACAAAGAACATTTTGCAACACTGGCTGTGGATGCTGTAATGAGGCTAAAGGGAAGCACAAACTTAGAGTCAATTCAAATCATAAAGAAGCCTGGAGGATCATTGAAGGATTCTTTTCTCGATGAAGGATTCATTCTTGACAAGAAAATTGGTATTGGGCAACCCAAGCGCATTGAGAATGCAAATATTTTGGTGTCAAATACAGCAATGGACACAGATAAAGTCAAAATCTATGGTGCACGAGTTCGTGTTGATTCAATGTCGAAGGTTGCTGAGATTGAGGGAGCTGAGAAGGAAAAAATGAGAGAGAAGGTTCAAAAGATTATAGGTCATGGCATTAATTGCTTTGTTAATCGACAATTGATCTATAATTTCCCAGAGGAGCTTTTTGCTGATGCGGGAATACTTGCTATTGAGCATGCTGATTTTGATGGTATTGAACGTCTGGCTTTAGTAACTGGTGGTGAAATTGCATCAACCTTTGACAATCCTGAATCTGTCAAACTTGGGCATTGCAAACTCATTGAGGAGATCATGATTGGCGAGGACAAGTTGATCCACTTTTCGGGCGTTGAAATGGGACAGGCTTGTACAATAGTTTTGAGAGGAGCTAGCCATCACGTTCTTGACGAGGCGGAAAGGTCTCTGCATGATGCTTTGTGCGTGTTATCCCAAACAATCATTGACAGTAGGGTTCTGCTTGGGGGTGGATGGCCGGAGATGATCATGGCTAAAGAAGTGGATGAGCTGGCTAGGAAGACTCCCGGCAAGAAATCACATGCTATTGAAGCTTTCTCAAGGGCACTGTCAGCAATCCCCACCATCATTGCTGATAATGCTGGGCTGGACAGTGCTGAGTTAATTTCCCAGCTTCGTGCTGAACACCATAAGGAAGGTTGCACTGCCGGGATTGATGTCATCTCAGGATCCGTGGGAGACATGGCAGAGCGGGGAATCTCAGAAGCATTTAAAGTGAAGCAAGCAATATTGCTATCTGCAACAGAGGCGGCAGAGATGATTCTTAGAGTTGATGAAATCATCACTTGCGCTCCACGAAAGAGAGAAGATAGAATGTGA 1530 43.2 MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGRSVTVTNDGATILKSLHIDNPAAKVLVVIDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGYRMAVECARNALLEKVVDNKDNSEMFKSDLMKIAMTTLSSKILSQDKEHFATLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENANILVSNTAMDTDKVKIYGARVRVDSMSKVAEIEGAEKEKMREKVQKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTIIDSRVLLGGGWPEMIMAKEVDELARKTPGKKSHAIEAFSRALSAIPTIIADNAGLDSAELISQLRAEHHKEGCTAGIDVISGSVGDMAERGISEAFKVKQAILLSATEAAEMILRVDEIITCAPRKREDRM 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81526990 81531078 - Bma003265.1 Bma01g02393 76910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02393 509 CDD TCP1_beta 1 504 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Bma01g02393 509 ProSitePatterns Chaperonins TCP-1 signature 3. 68 76 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bma01g02393 509 TIGRFAM chap_CCT_beta: T-complex protein 1, beta subunit 2 505 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Bma01g02393 509 Pfam TCP-1/cpn60 chaperonin family 10 499 IPR002423 GO:0005524
Bma01g02393 509 Gene3D GroEL 193 345 IPR027409 -
Bma01g02393 509 PANTHER CHAPERONIN 1 507 IPR017998 GO:0140662
Bma01g02393 509 ProSitePatterns Chaperonins TCP-1 signature 1. 15 27 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bma01g02393 509 PRINTS Tailless complex polypeptide 1 (chaperone) signature 68 87 IPR017998 GO:0140662
Bma01g02393 509 PRINTS Tailless complex polypeptide 1 (chaperone) signature 12 28 IPR017998 GO:0140662
Bma01g02393 509 PRINTS Tailless complex polypeptide 1 (chaperone) signature 383 395 IPR017998 GO:0140662
Bma01g02393 509 PRINTS Tailless complex polypeptide 1 (chaperone) signature 349 371 IPR017998 GO:0140662
Bma01g02393 509 PRINTS Tailless complex polypeptide 1 (chaperone) signature 36 54 IPR017998 GO:0140662
Bma01g02393 509 SUPERFAMILY GroEL apical domain-like 188 354 IPR027409 -
Bma01g02393 509 SUPERFAMILY GroEL-intermediate domain like 134 381 IPR027410 -
Bma01g02393 509 SUPERFAMILY GroEL equatorial domain-like 3 501 IPR027413 -
Bma01g02393 509 PANTHER BNAA02G05110D PROTEIN 1 507 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Bma01g02393 509 Gene3D - 124 381 IPR027410 -
Bma01g02393 509 ProSitePatterns Chaperonins TCP-1 signature 2. 38 54 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bma01g02393 509 Gene3D - 7 498 IPR027413 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02393 K09494 CCT2; T-complex protein 1 subunit beta - zju:107422720 930.628
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01106 Bma-Chr1:11646118 Bma01g02393 Bma-Chr1:81526990 1.56E-63 dispersed
Bma01g02393 Bma-Chr1:81526990 Bma07g01345 Bma-Chr7:48997074 1.28E-93 dispersed
Bma01g02393 Bma-Chr1:81526990 Bma04g00271 Bma-Chr4:2218504 2.73E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g138 Blo01g01618 . . . Bpe02g00326 . . Bma01g02393 . . Cma01g01996 . Car01g01568 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00955 . . . . . . Cmo01g02057 . . . . . . Cpe02g00049 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005792 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 3 1 1 2 1 1 39