Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02394 ATGGAGAAATCTGACAGCAACCCCAGGAAAGTTGGGCCTCGGCTTTGCTGTCTTTGTAGTCAGAGGAGAGCTGCTCTGAAGAGGCCAAAAACTATGCAACAGATTTGCAGGGAGTGTTTCTTCGAGGTGTTGGAAGATGAGATTCATCAGGTGATTATGGAGAACCATTTGTTTAAGCCCGGTGAGCGCATTGCTATTGGTGCATCTGGCGGCAAAGATTCTACAGTTCTTGCTTATATATTATCTGAATTGAATCGACGTCACAATTATGGGTTGGACCTCTTCCTCTTATCAGTGGATGAGGGCATTACGGGATACAGGGATGACTCTCTTGAAACTGTGAAAAGAAATGAAATTCAGTATGGACTGCCTTTGAAAATCTTATCATATAAGGATCTGTACGGGTGGACAATGGATGAAATAGTGAAGGTGATCGGTTTAAAGAATAATTGCACTTTCTGTGGGGTTTTTCGTCGCCAGGCCCTTGATAGAGGTGCTACATTGTTGAAAGTAGACAAGCTCGCAACTGGACATAATGCAGATGACATTGCTGAAACAGTTCTCTTAAACATCTTAAGAGGTGATATCGCTAGATTAAGCAGATGCACTGCAATAGTGACTGGTGAAGATGGACCAATTCCAAGATGCAAGCCCTTTAAGTACACATATGAAAAGGAGATCGTTATATATCCTTATTACGAATCCATTGATTGTATTTATTCCCCGAATGCATATCGTGGTTTTGCTCGGGAATTCATCAAGGACTTGGAAAGAATCAGACCTATCGCTATAATTGACATCATTCGATCAGGGGAAAATTTTAGAATTTCCACTTCTACAAAAATGCCTGAGCAGGGTACATGTGAACGATGTGGCTACATTTCAAGCCAGGGGATTCTCATCAATGGCCAATTCCCAGGCCCAGACATTTTCTCAGTTACAAATGATAATATCATTATCAATGTCTTCAACAGCTTGGACGAGCCTTTTCTCCTCTCCTGGAATGGCATTCAGCAGAGGAGGAATTCGTACGAAGATGGAGTTTTGGGAACTACGTGCCCCATTCCTCCGGGAAAGAACTTCACTTACATTCTCCAAATGAAGGATCAGATCGGAAGCTTTTATTACTTTCCCTCTCTTGGTTTCCACAAGGCCGCCGGTGGTTTCGGAGGTATCAGAATCCTGAGTCGGCCGCTGATTCCCGTCCCTTTTCCTGATCCCGCCGCCGATTATACAGTCCTCATTGGTGACTGGTATCAGGCTAACCACACGGCCTTGAGAGCTCAACTGGATCGTGGTAAGAAACTTCCGTTTCCTGATGGAATCCTCATCAATGGCCGTGGCCCTAATGGCACCTCTTTTTATGTTGAACAAGGTATACTGGTTAATTGGTCATTCGAATACGTCGCAGGAAAAACTTACAGGCTGAGAATATCAAACGTGGGGCTACAAAATTCACTCAACTTCAGAATTGAAGGCCACAAAATGACAGTGGTGGAGGTGGAGGGAACTCACACCATGCAGACCGTTTTCTCCTCTCTGGACGTTCACGTGGGCCAATCTTATTCCGTTCTGGTGACGGCGGACCAGCCGGCTCGGAGCTATTTTGTCGTGGTTTCCACTCGATTCACCTCTACAGTCCTGACCACCACCGGGTTTCTTCGTTACGGCAATTCTGCCAGCCCTCCTCTAGGCCCACTTCCCGGTGGCCCCACGATCCAAGTCGACTGGTCCCTCAACCAAGCACGTGCCATTAGGACCAATCTTACAGCGAGTGGACCGAGGCCGAACCCTCAAGGGTCATACCACTATGGTCTTATCAACACAACGAGAACCATCATCCTAGCCAACTCGCCCGGCCTCGTGAGTGGCAAGCAAAGGTATGCAGTTAACAGCGTGTCCTTCGTCCCCGTCGATACTCCATTGAAGATCGCTGATTACTTCAAAATCGGAGGAGTCTTTCGCGTCGGAAGCATTTCCGATAGGCCCACTGGCGGTGGCATCTACCTCGACACATCGGTTTTGGGTGCGGATTATAGAGCGTTTATTGAGATTGTATTCCAAAACAAGGAGGACATAATTCAAAGTTGGCACCTTAGTGGATACTCTTTCTTCGTCGTGGGCATGGATGGAGGCCAATGGAACAGCACTTGCAGAGATCAGTACAATCTCCGAGATGCGGTTGCGCGATGCACAGTTCAGGTATATCCAAAATCATGGACGGCGATATACGTAGCGCTGGACAACGTAGGAATGTGGAACTTGAGGTCGGAGTTCTGGGCGAGACAATACCTCGGCCAACAACTCTACTTGCGGGTTTATACGGCGTCCACTTCGCTCAGGGATGAGTACCCCATTCCAAAGAACGCTCTTCTCTGCGGCAGAGCCGCCGGCAGAAGAACTCGTCCTCTCTAA 2415 47.33 MEKSDSNPRKVGPRLCCLCSQRRAALKRPKTMQQICRECFFEVLEDEIHQVIMENHLFKPGERIAIGASGGKDSTVLAYILSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLKILSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGATLLKVDKLATGHNADDIAETVLLNILRGDIARLSRCTAIVTGEDGPIPRCKPFKYTYEKEIVIYPYYESIDCIYSPNAYRGFAREFIKDLERIRPIAIIDIIRSGENFRISTSTKMPEQGTCERCGYISSQGILINGQFPGPDIFSVTNDNIIINVFNSLDEPFLLSWNGIQQRRNSYEDGVLGTTCPIPPGKNFTYILQMKDQIGSFYYFPSLGFHKAAGGFGGIRILSRPLIPVPFPDPAADYTVLIGDWYQANHTALRAQLDRGKKLPFPDGILINGRGPNGTSFYVEQGILVNWSFEYVAGKTYRLRISNVGLQNSLNFRIEGHKMTVVEVEGTHTMQTVFSSLDVHVGQSYSVLVTADQPARSYFVVVSTRFTSTVLTTTGFLRYGNSASPPLGPLPGGPTIQVDWSLNQARAIRTNLTASGPRPNPQGSYHYGLINTTRTIILANSPGLVSGKQRYAVNSVSFVPVDTPLKIADYFKIGGVFRVGSISDRPTGGGIYLDTSVLGADYRAFIEIVFQNKEDIIQSWHLSGYSFFVVGMDGGQWNSTCRDQYNLRDAVARCTVQVYPKSWTAIYVALDNVGMWNLRSEFWARQYLGQQLYLRVYTASTSLRDEYPIPKNALLCGRAAGRRTRPL 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81534140 81542100 - Bma003266.1 Bma01g02394 76911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02394 804 SUPERFAMILY Cupredoxins 606 795 IPR008972 -
Bma01g02394 804 Pfam PP-loop family 64 238 IPR011063 -
Bma01g02394 804 Gene3D - 408 594 IPR008972 -
Bma01g02394 804 Gene3D HUPs 15 300 IPR014729 -
Bma01g02394 804 SUPERFAMILY Cupredoxins 404 596 IPR008972 -
Bma01g02394 804 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 38 260 - -
Bma01g02394 804 CDD Alpha_ANH_like_II 63 244 - -
Bma01g02394 804 PANTHER OSJNBA0084K11.18 PROTEIN 295 797 - -
Bma01g02394 804 Gene3D - 605 800 IPR008972 -
Bma01g02394 804 PANTHER MULTI-COPPER OXIDASE 295 797 IPR045087 -
Bma01g02394 804 SUPERFAMILY Cupredoxins 295 424 IPR008972 -
Bma01g02394 804 CDD CuRO_3_AAO_like_1 637 758 IPR034275 GO:0005507
Bma01g02394 804 Pfam Multicopper oxidase 642 776 IPR011706 GO:0005507|GO:0016491
Bma01g02394 804 Gene3D - 301 399 IPR008972 -
Bma01g02394 804 Pfam Multicopper oxidase 286 397 IPR011707 GO:0005507
Bma01g02394 804 Hamap Cytoplasmic tRNA 2-thiolation protein 1 [CTU1]. 14 335 IPR000541 GO:0000049|GO:0002098|GO:0034227
Bma01g02394 804 Pfam Multicopper oxidase 410 558 IPR001117 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02394 - - - csv:101212563 871.692
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02394 Bma01g00712 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02394 Bma-Chr1:81534140 Bma09g00318 Bma-Chr9:27330467 0 dispersed
Bma01g01695 Bma-Chr1:51078039 Bma01g02394 Bma-Chr1:81534140 0 transposed
Bma01g01745 Bma-Chr1:56103419 Bma01g02394 Bma-Chr1:81534140 0 transposed
Bma08g00730 Bma-Chr8:43149207 Bma01g02394 Bma-Chr1:81534140 0 transposed
Bma01g00712 Bma-Chr1:6495166 Bma01g02394 Bma-Chr1:81534140 0 wgd
Bma01g02394 Bma-Chr1:81534140 Bma05g00194 Bma-Chr5:5416461 5.05E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g137 Blo01g01619 . . . Bpe02g00325 . . Bma01g02394 Cmo05g00336 . Cma01g01997 Cma09g00072 Car01g01569 . . . . Bhi04g00090 . . . Hepe10g0675 . . Cla08g01388 Cam08g1861 Cec08g1440 Cco08g1572 Clacu08g1555 . Cre08g1339 . Cone7ag1919 Cone17ag1436 Cone20ag0046 Lsi04g01790 Csa04g02681 . Cme03g01548 Blo17g00723 Blo18g00757 Bda08g01183 . . Bpe05g00167 Bma01g00712 . Sed03g1664 Cmo01g02058 Cmo09g00073 . Cma05g00335 Car05g00279 . . . Bhi09g02935 Tan01g5072 . . Hepe01g2318 Mch11g0074 . Cla05g01582 Cam05g1690 Cec05g1693 Cco05g1740 Clacu05g1679 Cmu05g1570 Cre05g1687 Lsi08g01278 . Chy07g00372 Cme07g00076
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000048 7 10 7 9 7 11 7 11 13 11 8 10 14 9 12 16 10 16 4 10 12 10 16 10 14 12 11 19 23 4 333