Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02401 ATGCGCAGAGCAAGGATTCCTCTGCGGTCAATAGCGGACTCATTTAACAAATCAAAACCGATTGTAAATGAACAAAAGAGGCTTGCCTACACATTTAACTGTTTTTCGTCTCATGCAACCTTTTCCGGTCACGACTTTTTTAATTATGGAGTGGAATCAACAAGAAGGTCTATGCAGATGCAAATTGTTGAAGCACTTAGCTTGGGTGAGAAAAGCAGAGCTTCCAATTTACTTTTGGATCTTGGCCAAGGAAATTGTTCTTTAACTGCCAGCGATTTCTTATATATTCTCAGATATTGTGCAACAGCACCTGATCCAGTGTTTGTAATGGAGACTTGGAGGATAATGGAAGAAAAGAAGATTTGGCTAGATAACAGGTGCTCCTTGCTCATGATAAAAGCACTTTGCGAAGGGGGTTGTTTTGACGAGGCATTGGGGTTGATTAATTTTCTCAGAGAAAGCCATGGGAACTATTCTATTCTTACATTGTACAATTTTTTTCTAAGAGCCTGTTCTAAATTGCAAAGTCCAAGTCATACCAATCAATGTTTGGGTCTGATGGAGCAGAACATGGTGGGGAAAAATGAAGCAACGTACCTAGAGCTTCTGAAGCAAAACCTATCTGCAGTCCATCACATCTGGAAGGACTATATGAAAAATTACAGTCTGAACATTTTACCTCTGCGGAAATTTATTCGGTCTTTTGCAAGGTTGGGAGATTTAAATTCTGCATATGAAAAATTGCAACAGATGGTAGCTTTGGCCATTCGGGGAAGTACCTCTGTTTATAAAACTGCAAAAGGGAAGCTTTATTCGACAAGAATAGATATTCCTATACCTTTAAGAAGTGATTTTCACTCCAAGTTAGATTTCAATGAGAGCATTTATTCTTCACCTGCCTCATCAAGTGAGAAACCAGGTGCCCTTGCTAGTGACATAGTCCTATCGAACATTTCTGGCTTGACAGACGGAGGGAATGTGAATGGTGGAGTAGGTTATATGAATAGGTGTAACAGCAGTAGTGTTATGAAGCTTTTAAGGTGGTCTTTTAGTGATGTGATACATGCATCTGCACATGGGAAAAACTGTGGTCTAGCAAAGCAGTTATTACTACAGATGGAAAATCTTGGCCTGCAACCTTCAAGTCATACGTATCATGGTTTTGTTAAAGCAGTTATTTCAGAGGGCAGTTTCAGTGACGGAATTGATGTGCTGAAAATAATGCAACAGAGGAACTTGAAGCCATATAATTCAACTCTTGCAACTCTTTCAATTTGTTGCAGTGAAGTTCTTGAGTTAGATTTGGCTGAAGCTTTACTGGAACAAGTTTCTCATTGTCCATATCCACATCCTTTTAACAAATTTCTTGCTGCTTGTGACATGATGGACCAACCAGAAAGTGCCATCCGGATATTGACCAAAATGAAGCAGTTGAAACTTCAGCCAGATATCAGGACATATGAGCTCCTGTTTTCACTATTTGGTAATGTGAATGTACCTTATGAGAGGGCGGATTTGTTATCACAGGCAAATTCCTCCAAAAGAATAACTGCAATAGAGATGTACATGGCGAGGAATGGAGTTCAGCATAGTCATTTATCTATGAAGAACTTGTTAAAAGCTCTTGGACGTGAGGGGATGATAAGAAAGCTGCTTCAGTATTTGCATGTGGCAGAGAACCTTTTCTGTCGTAATAATACTTATTTGGGAATACCTATTTATAACGTAGTGTTGCATTCCTTAGTTAAAGCCAATGAAAGTGACAAGGCTCTAGAGATCTTTGAAGATTTGATGTTTAGTGGTTCCCTCCCGGACTCAACAACTTATAATATAATGATAGATTGTTGTAGCATTATACAATGCTTTAAATCTGCATGTGCACTGCTTTCCATAATGGTCCGCAAAGGATTTTGTCCAGAAACATCAACTTACACTAGCTTACTAAAGATTGTGTTGAATGAGGACAATTTTAAGGAAGCATTTAATATTATGGATCGAGCTTGTTCCGAAGAGAGAGAACTGGATGCTATGTTGTTTAATACTATCCTGAAAAAAGCTGCTGAAAAGGGGAGGATTGATATAATTGAGATCATCGTGGAAAAAATGCACCGTTGTAATGTACAGCCTGACACGTCAACATGCTCTTTTGTTTTCTCTGCATACATGGAGCATGGTTTTCACAACACTGCAGTGGAAGCATTGCAAGTTTTGAGCATGCGAATGCTATGTAGAGAAGATGGCATTATTTCAGATATTACAGATTGCGATGATATCATTTTTGACGAAGGTTCTGAATCTGAGACACAGATTTTGAAAATTTTTAACGATGGAGGTGAGAATCTTGCTGCGGCTCTTTTAAATTTAAGGTGGTCAGCAATGCTTGGATTCTCAGTTTCACAGGACCCAAATGAAAGCCCTTGGTCAAAAAGACTCTCCCAATCATTTGATATCGAAGGACATTCAACTTCTAAGAATTTATAA 2481 38.73 MRRARIPLRSIADSFNKSKPIVNEQKRLAYTFNCFSSHATFSGHDFFNYGVESTRRSMQMQIVEALSLGEKSRASNLLLDLGQGNCSLTASDFLYILRYCATAPDPVFVMETWRIMEEKKIWLDNRCSLLMIKALCEGGCFDEALGLINFLRESHGNYSILTLYNFFLRACSKLQSPSHTNQCLGLMEQNMVGKNEATYLELLKQNLSAVHHIWKDYMKNYSLNILPLRKFIRSFARLGDLNSAYEKLQQMVALAIRGSTSVYKTAKGKLYSTRIDIPIPLRSDFHSKLDFNESIYSSPASSSEKPGALASDIVLSNISGLTDGGNVNGGVGYMNRCNSSSVMKLLRWSFSDVIHASAHGKNCGLAKQLLLQMENLGLQPSSHTYHGFVKAVISEGSFSDGIDVLKIMQQRNLKPYNSTLATLSICCSEVLELDLAEALLEQVSHCPYPHPFNKFLAACDMMDQPESAIRILTKMKQLKLQPDIRTYELLFSLFGNVNVPYERADLLSQANSSKRITAIEMYMARNGVQHSHLSMKNLLKALGREGMIRKLLQYLHVAENLFCRNNTYLGIPIYNVVLHSLVKANESDKALEIFEDLMFSGSLPDSTTYNIMIDCCSIIQCFKSACALLSIMVRKGFCPETSTYTSLLKIVLNEDNFKEAFNIMDRACSEERELDAMLFNTILKKAAEKGRIDIIEIIVEKMHRCNVQPDTSTCSFVFSAYMEHGFHNTAVEALQVLSMRMLCREDGIISDITDCDDIIFDEGSESETQILKIFNDGGENLAAALLNLRWSAMLGFSVSQDPNESPWSKRLSQSFDIEGHSTSKNL 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81583625 81591694 - Bma003272.2 Bma01g02401 76918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02401 826 Pfam PPR repeat 131 153 IPR002885 -
Bma01g02401 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Bma01g02401 826 Pfam Pentatricopeptide repeat domain 452 496 IPR002885 -
Bma01g02401 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 605 639 IPR002885 -
Bma01g02401 826 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 816 - -
Bma01g02401 826 Pfam PPR repeat family 573 616 IPR002885 -
Bma01g02401 826 TIGRFAM PPR: pentatricopeptide repeat domain 573 605 IPR002885 -
Bma01g02401 826 TIGRFAM PPR: pentatricopeptide repeat domain 608 639 IPR002885 -
Bma01g02401 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
Bma01g02401 826 Gene3D Tetratricopeptide repeat domain 55 275 IPR011990 GO:0005515
Bma01g02401 826 Gene3D Tetratricopeptide repeat domain 571 748 IPR011990 GO:0005515
Bma01g02401 826 Gene3D Tetratricopeptide repeat domain 448 570 IPR011990 GO:0005515
Bma01g02401 826 Gene3D Tetratricopeptide repeat domain 340 447 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02401 - - - qlo:115974617 971.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02401 Bma-Chr1:81583625 Bma15g01075 Bma-Chr15:43059172 1.42E-07 dispersed
Bma01g02401 Bma-Chr1:81583625 Bma15g00486 Bma-Chr15:5660373 4.61E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g114 Blo01g01626 . . . Bpe02g00316 . . Bma01g02401 . . . . . . . Cpe06g00028 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00963 . . . . . . . Cmo09g00062 . . . Car09g00053 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005329 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 3 2 1 40