Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02408 ATGTTTGTGCAGCACACAGAAGCAATGTTGGAGGAAATTGATAGGATGGAGGAAGTTGAAATGAAAGATATAAACCAGGATCCTGTCGAGGATATAGACAGCTGCGATAAGAACAATTCGCTGGCTGTTGTCGAGTACTTAGAAGATTTATTTAGCCATTATAGGAATGCTGAGATTTCAAACTGTGTTTCACCAGATTACATGGCTCAGCAATCGGATATTAATGAAAGAATGAGAGGTATTCTCGTTGATTGGCTGATTGAGGTTCATTACAAGTTTGAGCTGATGGATGAGACCTTGTATCTTACCGTCAACCTCATTGATAGATTTTTAAGTCTTCAACCAGTGGTGAGGAAGAAACTCCAGTTGGTAGGGGTGACAGCCATGCTTCTTGCTTGCAAATATGAAGAAGTTTCTGTTCCAATCGTGGACGATCTTATTCTGATATCTGATAAGGCTTACTGCAGAAAAGAAGTGCTTGAAATGGAAAAATTAATGGTCAATACCTTACAGTTTCATATGTCTGTTCCTACTCCATATGTGTTTATGAAGAGATTTCTCAAAGCTTCTCAATCTCACCAAAAGCCAAATTGTCCTTTGTTGAAACAGCTTGAGCTACTTTCCTTCTTCATGGTCGAGCTTTGCCTAGTCGAGTATGAAATGCTCAAGTTCCATCCTTCTCTGTTAGCTGCGGCCGCAATTTTCACCGCGCAGTGGGCTTTAAATGGATTCCAACAATGGAGCAAAACAAGTGAATGGTACACTGGCTATTCAAAAGAGCAGCTTCTTGAATGCTCAATGAAGATGGTTGCTTTCCATCAGAAAGCTGGAACGGGAAAGCTAGTTGGAGTTCACCGGAAGTACAGTACAGCCAAGTTTGGATATGCTGCCAGAGTTGATCCGGCTAAGTGGAGTTAA 918 41.18 MFVQHTEAMLEEIDRMEEVEMKDINQDPVEDIDSCDKNNSLAVVEYLEDLFSHYRNAEISNCVSPDYMAQQSDINERMRGILVDWLIEVHYKFELMDETLYLTVNLIDRFLSLQPVVRKKLQLVGVTAMLLACKYEEVSVPIVDDLILISDKAYCRKEVLEMEKLMVNTLQFHMSVPTPYVFMKRFLKASQSHQKPNCPLLKQLELLSFFMVELCLVEYEMLKFHPSLLAAAAIFTAQWALNGFQQWSKTSEWYTGYSKEQLLECSMKMVAFHQKAGTGKLVGVHRKYSTAKFGYAARVDPAKWS 305
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 81648498 81650020 - Bma003279.1 Bma01g02408 76925
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02408 305 Gene3D - 49 297 - -
Bma01g02408 305 Gene3D - 63 175 - -
Bma01g02408 305 SUPERFAMILY Cyclin-like 38 174 IPR036915 -
Bma01g02408 305 Pfam Cyclin, N-terminal domain 49 174 IPR006671 -
Bma01g02408 305 PANTHER CYCLINS 1 303 IPR039361 -
Bma01g02408 305 PANTHER CYCLIN-B2-3-RELATED 1 303 - -
Bma01g02408 305 SUPERFAMILY Cyclin-like 176 302 IPR036915 -
Bma01g02408 305 SMART Cyclin_C_2 177 302 IPR004367 -
Bma01g02408 305 SMART cyclin_7 181 271 IPR013763 -
Bma01g02408 305 SMART cyclin_7 84 168 IPR013763 -
Bma01g02408 305 PIRSF Cyclin_A_B_D_E 2 305 IPR039361 -
Bma01g02408 305 Pfam Cyclin, C-terminal domain 177 299 IPR004367 -
Bma01g02408 305 CDD CYCLIN 175 270 IPR013763 -
Bma01g02408 305 CDD CYCLIN 78 167 IPR013763 -
Bma01g02408 305 ProSitePatterns Cyclins signature. 79 110 IPR006671 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02408 Bma-Chr1:81648498 Bma01g02702 Bma-Chr1:84443833 4.90E-78 dispersed
Bma03g00492 Bma-Chr3:3870749 Bma01g02408 Bma-Chr1:81648498 5.19E-56 dispersed
Bma01g00703 Bma-Chr1:6423557 Bma01g02408 Bma-Chr1:81648498 1.76E-159 wgd
Bma01g02408 Bma-Chr1:81648498 Bma06g00078 Bma-Chr6:1217076 1.55E-126 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02408 K21777 - csv:101223199 483.411