Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma01g02408 | ATGTTTGTGCAGCACACAGAAGCAATGTTGGAGGAAATTGATAGGATGGAGGAAGTTGAAATGAAAGATATAAACCAGGATCCTGTCGAGGATATAGACAGCTGCGATAAGAACAATTCGCTGGCTGTTGTCGAGTACTTAGAAGATTTATTTAGCCATTATAGGAATGCTGAGATTTCAAACTGTGTTTCACCAGATTACATGGCTCAGCAATCGGATATTAATGAAAGAATGAGAGGTATTCTCGTTGATTGGCTGATTGAGGTTCATTACAAGTTTGAGCTGATGGATGAGACCTTGTATCTTACCGTCAACCTCATTGATAGATTTTTAAGTCTTCAACCAGTGGTGAGGAAGAAACTCCAGTTGGTAGGGGTGACAGCCATGCTTCTTGCTTGCAAATATGAAGAAGTTTCTGTTCCAATCGTGGACGATCTTATTCTGATATCTGATAAGGCTTACTGCAGAAAAGAAGTGCTTGAAATGGAAAAATTAATGGTCAATACCTTACAGTTTCATATGTCTGTTCCTACTCCATATGTGTTTATGAAGAGATTTCTCAAAGCTTCTCAATCTCACCAAAAGCCAAATTGTCCTTTGTTGAAACAGCTTGAGCTACTTTCCTTCTTCATGGTCGAGCTTTGCCTAGTCGAGTATGAAATGCTCAAGTTCCATCCTTCTCTGTTAGCTGCGGCCGCAATTTTCACCGCGCAGTGGGCTTTAAATGGATTCCAACAATGGAGCAAAACAAGTGAATGGTACACTGGCTATTCAAAAGAGCAGCTTCTTGAATGCTCAATGAAGATGGTTGCTTTCCATCAGAAAGCTGGAACGGGAAAGCTAGTTGGAGTTCACCGGAAGTACAGTACAGCCAAGTTTGGATATGCTGCCAGAGTTGATCCGGCTAAGTGGAGTTAA | 918 | 41.18 | MFVQHTEAMLEEIDRMEEVEMKDINQDPVEDIDSCDKNNSLAVVEYLEDLFSHYRNAEISNCVSPDYMAQQSDINERMRGILVDWLIEVHYKFELMDETLYLTVNLIDRFLSLQPVVRKKLQLVGVTAMLLACKYEEVSVPIVDDLILISDKAYCRKEVLEMEKLMVNTLQFHMSVPTPYVFMKRFLKASQSHQKPNCPLLKQLELLSFFMVELCLVEYEMLKFHPSLLAAAAIFTAQWALNGFQQWSKTSEWYTGYSKEQLLECSMKMVAFHQKAGTGKLVGVHRKYSTAKFGYAARVDPAKWS | 305 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 81648498 | 81650020 | - | Bma003279.1 | Bma01g02408 | 76925 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma01g02408 | 305 | Gene3D | - | 49 | 297 | - | - | |
| Bma01g02408 | 305 | Gene3D | - | 63 | 175 | - | - | |
| Bma01g02408 | 305 | SUPERFAMILY | Cyclin-like | 38 | 174 | IPR036915 | - | |
| Bma01g02408 | 305 | Pfam | Cyclin, N-terminal domain | 49 | 174 | IPR006671 | - | |
| Bma01g02408 | 305 | PANTHER | CYCLINS | 1 | 303 | IPR039361 | - | |
| Bma01g02408 | 305 | PANTHER | CYCLIN-B2-3-RELATED | 1 | 303 | - | - | |
| Bma01g02408 | 305 | SUPERFAMILY | Cyclin-like | 176 | 302 | IPR036915 | - | |
| Bma01g02408 | 305 | SMART | Cyclin_C_2 | 177 | 302 | IPR004367 | - | |
| Bma01g02408 | 305 | SMART | cyclin_7 | 181 | 271 | IPR013763 | - | |
| Bma01g02408 | 305 | SMART | cyclin_7 | 84 | 168 | IPR013763 | - | |
| Bma01g02408 | 305 | PIRSF | Cyclin_A_B_D_E | 2 | 305 | IPR039361 | - | |
| Bma01g02408 | 305 | Pfam | Cyclin, C-terminal domain | 177 | 299 | IPR004367 | - | |
| Bma01g02408 | 305 | CDD | CYCLIN | 175 | 270 | IPR013763 | - | |
| Bma01g02408 | 305 | CDD | CYCLIN | 78 | 167 | IPR013763 | - | |
| Bma01g02408 | 305 | ProSitePatterns | Cyclins signature. | 79 | 110 | IPR006671 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma01g02408 | Bma-Chr1:81648498 | Bma01g02702 | Bma-Chr1:84443833 | 4.90E-78 | dispersed | |
| Bma03g00492 | Bma-Chr3:3870749 | Bma01g02408 | Bma-Chr1:81648498 | 5.19E-56 | dispersed | |
| Bma01g00703 | Bma-Chr1:6423557 | Bma01g02408 | Bma-Chr1:81648498 | 1.76E-159 | wgd | |
| Bma01g02408 | Bma-Chr1:81648498 | Bma06g00078 | Bma-Chr6:1217076 | 1.55E-126 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma01g02408 | K21777 | - | csv:101223199 | 483.411 |