Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02412 ATGGAGTGGCAGAATCAGCAGCAAAACCAAGCAGAGCAACTGCCAATGCAACTGCCGATTGATCAATTGCCGAACCCAGATGGGTTGTACGTGAAAGTGATGACGGACGAGCAAATGGAGCTTCTCCGGCGACAGATCTCCGTCTACGCTACCATTTGTGAGCAGCTTGTCGAGATGCACAAGGCGATGACTGCCCAACAGGACATAACAGGAATGAGGTTGGGGAATCTCTACTGTGATCCAATGATGGCATCTAGCGGACACAAGATTACTGCTCGACAAAGGTGGACTCCAACTCCCGTGCAGCTTCAGATGCTGGAGCGTATTTTTGATGAAGGAAATGGCACTCCGAGCAAGCAGAAGATTAGAGAGATAACTGTAGAGCTCTCACAACACGGCCAAATCTCCGAAGCAAATGTGTATAATTGGTTCCAAAACAGAAGAGCTCGTTCGAAAAGAAAGCAGTCAGTTTCGATCCATAACAATGCAGATTCTGAAGTTGAAACCGAAGTCGAATCTCCAAAGGAAGAGAAGACGAAGCCGGTAGGCGCCCCATCGTTTGAGAATCTCGTACAGAGGACGGGTGATATTTATAACCAGAAATCGGAGTTGAATGCGGAAATGCAGTACTTGGATGCACAATCAAATAAAGGGGAGCCCGTTTTTCACTTCAGATCTTGTAATTCAGGCCATATGAGTGCCGTGCCGAGTCAAAGGACGGATCTGACTATCAACAAATTGGAAATTCCGGGTTACAGCTCCTACAATCCTTGCGACGGTTATGACCTGATTGAGTGA 798 47.24 MEWQNQQQNQAEQLPMQLPIDQLPNPDGLYVKVMTDEQMELLRRQISVYATICEQLVEMHKAMTAQQDITGMRLGNLYCDPMMASSGHKITARQRWTPTPVQLQMLERIFDEGNGTPSKQKIREITVELSQHGQISEANVYNWFQNRRARSKRKQSVSIHNNADSEVETEVESPKEEKTKPVGAPSFENLVQRTGDIYNQKSELNAEMQYLDAQSNKGEPVFHFRSCNSGHMSAVPSQRTDLTINKLEIPGYSSYNPCDGYDLIE 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81704465 81706266 + Bma003284.1 Bma01g02412 76929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02412 265 Gene3D - 95 160 - -
Bma01g02412 265 SMART HOX_1 91 158 IPR001356 GO:0003677
Bma01g02412 265 ProSiteProfiles 'Homeobox' domain profile. 89 154 IPR001356 GO:0003677
Bma01g02412 265 PANTHER - 1 263 - -
Bma01g02412 265 MobiDBLite consensus disorder prediction 165 182 - -
Bma01g02412 265 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 263 IPR044559 GO:0003700
Bma01g02412 265 MobiDBLite consensus disorder prediction 152 182 - -
Bma01g02412 265 SUPERFAMILY Homeodomain-like 92 157 IPR009057 -
Bma01g02412 265 CDD homeodomain 93 155 IPR001356 GO:0003677
Bma01g02412 265 Pfam Homeodomain 93 153 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02412 - - - bhj:120085747 353.214
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02412 Bma04g00291 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02412 Bma-Chr1:81704465 Bma10g00996 Bma-Chr10:23492870 1.06E-106 dispersed
Bma01g02412 Bma-Chr1:81704465 Bma04g00291 Bma-Chr4:2338187 3.01E-115 wgd
Bma01g02412 Bma-Chr1:81704465 Bma06g00075 Bma-Chr6:1177395 1.31E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g02412 BCT 1 216 Wox Gene Family AT4G35550 53.4 9.0e-60 227.3
Bma04g00291 BCT 30 171 Wox Gene Family AT4G35550 67.1 6.5e-50 194.5
Bma10g00996 . 30 176 Wox Gene Family AT4G35550 65.1 6.1e-48 188.0
Bma05g00042 BCT 5 151 Wox Gene Family AT1G46480 66.7 4.6e-50 194.5
Bma01g00657 BCT 3 148 Wox Gene Family AT1G46480 61.9 1.5e-45 179.5
Bma05g00042 BCT 5 151 Wox Gene Family AT1G46480 66.7 4.6e-50 194.5
Bma01g00657 BCT 3 148 Wox Gene Family AT1G46480 61.9 1.5e-45 179.5
Bma01g02412 BCT 1 216 Wox Gene Family AT4G35550 53.4 9.0e-60 227.3
Bma04g00291 BCT 30 171 Wox Gene Family AT4G35550 67.1 6.5e-50 194.5
Bma10g00996 . 30 176 Wox Gene Family AT4G35550 65.1 6.1e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56804 PF00046 Homeodomain 7.70E-18 CL0123 Bma TF