Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02413 ATGGCTGAAACTTGGAATGGGTCGAATGAGCTAGAAAGCCAGACAGACGAGAGTAATTATATTGAGAAGATTCACCTTGAGCCTATGTATGATTCATTTATCTGCCCTTTGACAAAGCAAGTTATGAGGGATCCCGTCACCTTAGAGAATGGGCAGACGTTTGAACGGGAAGCCATTGAAAAGTGGTTCAAGAAATGCAAAAGTGGGAGGAAGATAATCTGTCCAGTGACCAGAAAAGAATTAAGAAGCAATGATTTGAACCCAAGTATTGCCCTGCGGAACACCATTGAAGAGTGGATTGCGAGGAATGAAGCCGTGCAGCTAGATATGGCTCGCAAATCCTTAAATCTTGGCAGTGCAGAAAATGACATTATGTACTATTTGAAATATGTCCAGGACGTATGCCAAAAAACCCAAGCAAATAAGTATGTTGTCCGAGATGCAGGGCTCATACCTATGATCATTGATTTGTTGAAGAGCGTCAGTGAAAATGTTCGTTGCAGAACATTAGAAACTCTCCGTATAGTGGTGGAGGGAGACGATGAAAATAAGGTCATCCCAGTATTGGCGGAAGGTGACACGGTGAGGACAATAGTGAAATTCTTGTCTCGTGATTTTTCTGAGAAGGAGGAGGCTGTCTCTTTGTTGTTTGAGCTCTCTAAATCTAGAGTGCTGTCTGAGAAGATTTGTTCAATAGCTGGAGCAATACTTATTTTAAGTGGAATGACAAACAGCCAATCAGAGAATCTTATAATTGCTGAAAAAGCTGATAGAACATTGGAGAATCTGGAAAAGTGTGAAAATTATGTGCAAGAGTTAGCTCAAAATGGCAGACTGCAGCCTCTACTCACTCAGATTCTTGAAGGTCCTCCAGAAATCAAAGTCTCCATGGTTGCTTATCTTGGGGAGCAAGTTTTGAATAATGAACAAAAAATCTTTGTGGCTAAAGCTGTGGGGTCGTCTTTGATTAGTATCATAAGAAGCAGTAATATGCAGTCTAGAGAAGCTGCTCTGAAAGCATTAAATCAGATCTCATCTTTCGAGGCGAGTGCAAAAGTGTTGATTGATAAAGGCATACTTCCACCTCTTGTCAAGGGCCTTTTTACGGTTGGATCGAAGCAGCTACCCATGCGACTGAAGGAGGTTTCAGCAACAATTCTTGCAAATGTTATCAGCTCAAGCAATGACTTCGATTCAATTCCTGTTGGACCTGATCCACGGACTACTTTGGTCTCGGAAGACATAATCCTTAATCTGCTACATCTGATTAGCAACACTGGTCCAGCAATTGAACGTGAGCTTCTCCAGGTTCTTGTCGGTCTCACTAATTCACCCTCCACTGTTCTAAATGTTGTTTCTGCCATTAAAAGCTCTGGTGCAACTATAACCTTGATTCAGTTCATTGAGGCCCCACAGCCCGATTTGCGGGTTGCTTCTCTGAAACTCTTGAAAAATATCTCCCCACATATGAGTGAGGAACTGGCGGAATCTTTTCGAGTTGCAGTTGGCCAGCTTAGCAGTCTGTTTAAAATCATATCAGAAAACACTGTCATCACTGAAGAGCAAGCAGCCGCTGTTGGTGTTCTTGCTGACCTCCCTCAAATGGATTTGACCATCACAATGAGAATGCTCGATGAAGGAACCCTCAGGCTGGTTTACTCTAGAATTGTCGGGATCAGACAAGGGGAGACTAGAGGTGGCCGATATATGACTCCATTTCTCGAAGCACTTGTTAGAATTCTTGCAAGAGTTACCTTTTTCTTAGCAGATGAGCCTTCCACCCTCGCATTTTGTCGCGACTACAATCTCGCTGGACTCTTCATTGAACTGCTTCAATCCAATGGAATCGATGCCGTACAAATGACTTCGGCCATAGCCTTGGAGGCCTTATCTCTAGAATCTAAAAAATTGACAAAACTTCCCGAGTTGCCTCCTCCTGGCTTTTGTGGCACAATATTCAATTGTTTTAGCCCACAGCCGAACTTAACAGGACTGTGCAGAATCCATGGAGGGACGTGTTCTTTGAAAGAGAGTTTTTGTCTTTTGGAAGGCAAGGCAGTAGAGAAGCTTGTTGCTCTTTTAGACCATGCGAATGTGAAGGTCGTTGAAGCAGCTCTTGCTGCAATTTCTACTTTGCTGGATGATGAGGTCAACATTGAACAAGGAGTGGTAGTGTTGTGTGATGCTGATGGGGTTCAACCTATACTTGACATATTGCTTGAGAAAAGGTCAGAGACTCTGAGGAGTAGGGCTGTCTGGACAGTCGAGAGACTTCTTCGAACTGAAGATATTGCATACCAAATTTCTGGAAATCAAATTGTGAATACTGCCCTTGTTGATGCCTTCCATCATGGTGACTATCGAACCCGGCAAATTGCTGAACGTGCTCTAAGGCACGTTGATCGGTTGCCTAATTTCTCCGAAATATTCCCCAAAAAGGGGTAA 2445 43.19 MAETWNGSNELESQTDESNYIEKIHLEPMYDSFICPLTKQVMRDPVTLENGQTFEREAIEKWFKKCKSGRKIICPVTRKELRSNDLNPSIALRNTIEEWIARNEAVQLDMARKSLNLGSAENDIMYYLKYVQDVCQKTQANKYVVRDAGLIPMIIDLLKSVSENVRCRTLETLRIVVEGDDENKVIPVLAEGDTVRTIVKFLSRDFSEKEEAVSLLFELSKSRVLSEKICSIAGAILILSGMTNSQSENLIIAEKADRTLENLEKCENYVQELAQNGRLQPLLTQILEGPPEIKVSMVAYLGEQVLNNEQKIFVAKAVGSSLISIIRSSNMQSREAALKALNQISSFEASAKVLIDKGILPPLVKGLFTVGSKQLPMRLKEVSATILANVISSSNDFDSIPVGPDPRTTLVSEDIILNLLHLISNTGPAIERELLQVLVGLTNSPSTVLNVVSAIKSSGATITLIQFIEAPQPDLRVASLKLLKNISPHMSEELAESFRVAVGQLSSLFKIISENTVITEEQAAAVGVLADLPQMDLTITMRMLDEGTLRLVYSRIVGIRQGETRGGRYMTPFLEALVRILARVTFFLADEPSTLAFCRDYNLAGLFIELLQSNGIDAVQMTSAIALEALSLESKKLTKLPELPPPGFCGTIFNCFSPQPNLTGLCRIHGGTCSLKESFCLLEGKAVEKLVALLDHANVKVVEAALAAISTLLDDEVNIEQGVVVLCDADGVQPILDILLEKRSETLRSRAVWTVERLLRTEDIAYQISGNQIVNTALVDAFHHGDYRTRQIAERALRHVDRLPNFSEIFPKKG 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81708023 81711276 + Bma003285.1 Bma01g02413 76930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02413 814 Gene3D - 278 487 IPR011989 -
Bma01g02413 814 SUPERFAMILY ARM repeat 455 802 IPR016024 -
Bma01g02413 814 Gene3D - 119 250 IPR011989 -
Bma01g02413 814 SUPERFAMILY RING/U-box 23 109 - -
Bma01g02413 814 SUPERFAMILY ARM repeat 119 532 IPR016024 -
Bma01g02413 814 Gene3D - 574 808 IPR011989 -
Bma01g02413 814 SMART Ubox_2 32 99 IPR003613 GO:0004842|GO:0016567
Bma01g02413 814 Coils Coil 256 276 - -
Bma01g02413 814 Pfam U-box domain 31 104 IPR003613 GO:0004842|GO:0016567
Bma01g02413 814 SMART arm_5 307 346 IPR000225 GO:0005515
Bma01g02413 814 SMART arm_5 673 714 IPR000225 GO:0005515
Bma01g02413 814 SMART arm_5 180 221 IPR000225 GO:0005515
Bma01g02413 814 SMART arm_5 138 178 IPR000225 GO:0005515
Bma01g02413 814 SMART arm_5 347 392 IPR000225 GO:0005515
Bma01g02413 814 SMART arm_5 718 760 IPR000225 GO:0005515
Bma01g02413 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 114 IPR013083 -
Bma01g02413 814 CDD RING-Ubox_PUB 33 79 IPR045210 -
Bma01g02413 814 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 812 - -
Bma01g02413 814 ProSiteProfiles U-box domain profile. 28 106 IPR003613 GO:0004842|GO:0016567
Bma01g02413 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 812 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02413 Bma01g00699 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02413 Bma-Chr1:81708023 Bma11g00078 Bma-Chr11:883286 1.53E-96 dispersed
Bma02g00814 Bma-Chr2:44450953 Bma01g02413 Bma-Chr1:81708023 7.52E-43 transposed
Bma01g00699 Bma-Chr1:6399953 Bma01g02413 Bma-Chr1:81708023 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02413 - - pop:7496852 1147.5