Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02413 ATGGCTGAAACTTGGAATGGGTCGAATGAGCTAGAAAGCCAGACAGACGAGAGTAATTATATTGAGAAGATTCACCTTGAGCCTATGTATGATTCATTTATCTGCCCTTTGACAAAGCAAGTTATGAGGGATCCCGTCACCTTAGAGAATGGGCAGACGTTTGAACGGGAAGCCATTGAAAAGTGGTTCAAGAAATGCAAAAGTGGGAGGAAGATAATCTGTCCAGTGACCAGAAAAGAATTAAGAAGCAATGATTTGAACCCAAGTATTGCCCTGCGGAACACCATTGAAGAGTGGATTGCGAGGAATGAAGCCGTGCAGCTAGATATGGCTCGCAAATCCTTAAATCTTGGCAGTGCAGAAAATGACATTATGTACTATTTGAAATATGTCCAGGACGTATGCCAAAAAACCCAAGCAAATAAGTATGTTGTCCGAGATGCAGGGCTCATACCTATGATCATTGATTTGTTGAAGAGCGTCAGTGAAAATGTTCGTTGCAGAACATTAGAAACTCTCCGTATAGTGGTGGAGGGAGACGATGAAAATAAGGTCATCCCAGTATTGGCGGAAGGTGACACGGTGAGGACAATAGTGAAATTCTTGTCTCGTGATTTTTCTGAGAAGGAGGAGGCTGTCTCTTTGTTGTTTGAGCTCTCTAAATCTAGAGTGCTGTCTGAGAAGATTTGTTCAATAGCTGGAGCAATACTTATTTTAAGTGGAATGACAAACAGCCAATCAGAGAATCTTATAATTGCTGAAAAAGCTGATAGAACATTGGAGAATCTGGAAAAGTGTGAAAATTATGTGCAAGAGTTAGCTCAAAATGGCAGACTGCAGCCTCTACTCACTCAGATTCTTGAAGGTCCTCCAGAAATCAAAGTCTCCATGGTTGCTTATCTTGGGGAGCAAGTTTTGAATAATGAACAAAAAATCTTTGTGGCTAAAGCTGTGGGGTCGTCTTTGATTAGTATCATAAGAAGCAGTAATATGCAGTCTAGAGAAGCTGCTCTGAAAGCATTAAATCAGATCTCATCTTTCGAGGCGAGTGCAAAAGTGTTGATTGATAAAGGCATACTTCCACCTCTTGTCAAGGGCCTTTTTACGGTTGGATCGAAGCAGCTACCCATGCGACTGAAGGAGGTTTCAGCAACAATTCTTGCAAATGTTATCAGCTCAAGCAATGACTTCGATTCAATTCCTGTTGGACCTGATCCACGGACTACTTTGGTCTCGGAAGACATAATCCTTAATCTGCTACATCTGATTAGCAACACTGGTCCAGCAATTGAACGTGAGCTTCTCCAGGTTCTTGTCGGTCTCACTAATTCACCCTCCACTGTTCTAAATGTTGTTTCTGCCATTAAAAGCTCTGGTGCAACTATAACCTTGATTCAGTTCATTGAGGCCCCACAGCCCGATTTGCGGGTTGCTTCTCTGAAACTCTTGAAAAATATCTCCCCACATATGAGTGAGGAACTGGCGGAATCTTTTCGAGTTGCAGTTGGCCAGCTTAGCAGTCTGTTTAAAATCATATCAGAAAACACTGTCATCACTGAAGAGCAAGCAGCCGCTGTTGGTGTTCTTGCTGACCTCCCTCAAATGGATTTGACCATCACAATGAGAATGCTCGATGAAGGAACCCTCAGGCTGGTTTACTCTAGAATTGTCGGGATCAGACAAGGGGAGACTAGAGGTGGCCGATATATGACTCCATTTCTCGAAGCACTTGTTAGAATTCTTGCAAGAGTTACCTTTTTCTTAGCAGATGAGCCTTCCACCCTCGCATTTTGTCGCGACTACAATCTCGCTGGACTCTTCATTGAACTGCTTCAATCCAATGGAATCGATGCCGTACAAATGACTTCGGCCATAGCCTTGGAGGCCTTATCTCTAGAATCTAAAAAATTGACAAAACTTCCCGAGTTGCCTCCTCCTGGCTTTTGTGGCACAATATTCAATTGTTTTAGCCCACAGCCGAACTTAACAGGACTGTGCAGAATCCATGGAGGGACGTGTTCTTTGAAAGAGAGTTTTTGTCTTTTGGAAGGCAAGGCAGTAGAGAAGCTTGTTGCTCTTTTAGACCATGCGAATGTGAAGGTCGTTGAAGCAGCTCTTGCTGCAATTTCTACTTTGCTGGATGATGAGGTCAACATTGAACAAGGAGTGGTAGTGTTGTGTGATGCTGATGGGGTTCAACCTATACTTGACATATTGCTTGAGAAAAGGTCAGAGACTCTGAGGAGTAGGGCTGTCTGGACAGTCGAGAGACTTCTTCGAACTGAAGATATTGCATACCAAATTTCTGGAAATCAAATTGTGAATACTGCCCTTGTTGATGCCTTCCATCATGGTGACTATCGAACCCGGCAAATTGCTGAACGTGCTCTAAGGCACGTTGATCGGTTGCCTAATTTCTCCGAAATATTCCCCAAAAAGGGGTAA 2445 43.19 MAETWNGSNELESQTDESNYIEKIHLEPMYDSFICPLTKQVMRDPVTLENGQTFEREAIEKWFKKCKSGRKIICPVTRKELRSNDLNPSIALRNTIEEWIARNEAVQLDMARKSLNLGSAENDIMYYLKYVQDVCQKTQANKYVVRDAGLIPMIIDLLKSVSENVRCRTLETLRIVVEGDDENKVIPVLAEGDTVRTIVKFLSRDFSEKEEAVSLLFELSKSRVLSEKICSIAGAILILSGMTNSQSENLIIAEKADRTLENLEKCENYVQELAQNGRLQPLLTQILEGPPEIKVSMVAYLGEQVLNNEQKIFVAKAVGSSLISIIRSSNMQSREAALKALNQISSFEASAKVLIDKGILPPLVKGLFTVGSKQLPMRLKEVSATILANVISSSNDFDSIPVGPDPRTTLVSEDIILNLLHLISNTGPAIERELLQVLVGLTNSPSTVLNVVSAIKSSGATITLIQFIEAPQPDLRVASLKLLKNISPHMSEELAESFRVAVGQLSSLFKIISENTVITEEQAAAVGVLADLPQMDLTITMRMLDEGTLRLVYSRIVGIRQGETRGGRYMTPFLEALVRILARVTFFLADEPSTLAFCRDYNLAGLFIELLQSNGIDAVQMTSAIALEALSLESKKLTKLPELPPPGFCGTIFNCFSPQPNLTGLCRIHGGTCSLKESFCLLEGKAVEKLVALLDHANVKVVEAALAAISTLLDDEVNIEQGVVVLCDADGVQPILDILLEKRSETLRSRAVWTVERLLRTEDIAYQISGNQIVNTALVDAFHHGDYRTRQIAERALRHVDRLPNFSEIFPKKG 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81708023 81711276 + Bma003285.1 Bma01g02413 76930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02413 814 Gene3D - 278 487 IPR011989 -
Bma01g02413 814 SUPERFAMILY ARM repeat 455 802 IPR016024 -
Bma01g02413 814 Gene3D - 119 250 IPR011989 -
Bma01g02413 814 SUPERFAMILY RING/U-box 23 109 - -
Bma01g02413 814 SUPERFAMILY ARM repeat 119 532 IPR016024 -
Bma01g02413 814 Gene3D - 574 808 IPR011989 -
Bma01g02413 814 SMART Ubox_2 32 99 IPR003613 GO:0004842|GO:0016567
Bma01g02413 814 Coils Coil 256 276 - -
Bma01g02413 814 Pfam U-box domain 31 104 IPR003613 GO:0004842|GO:0016567
Bma01g02413 814 SMART arm_5 307 346 IPR000225 GO:0005515
Bma01g02413 814 SMART arm_5 673 714 IPR000225 GO:0005515
Bma01g02413 814 SMART arm_5 180 221 IPR000225 GO:0005515
Bma01g02413 814 SMART arm_5 138 178 IPR000225 GO:0005515
Bma01g02413 814 SMART arm_5 347 392 IPR000225 GO:0005515
Bma01g02413 814 SMART arm_5 718 760 IPR000225 GO:0005515
Bma01g02413 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 114 IPR013083 -
Bma01g02413 814 CDD RING-Ubox_PUB 33 79 IPR045210 -
Bma01g02413 814 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 812 - -
Bma01g02413 814 ProSiteProfiles U-box domain profile. 28 106 IPR003613 GO:0004842|GO:0016567
Bma01g02413 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 812 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02413 - - - pop:7496852 1147.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02413 Bma01g00699 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02413 Bma-Chr1:81708023 Bma11g00078 Bma-Chr11:883286 1.53E-96 dispersed
Bma02g00814 Bma-Chr2:44450953 Bma01g02413 Bma-Chr1:81708023 7.52E-43 transposed
Bma01g00699 Bma-Chr1:6399953 Bma01g02413 Bma-Chr1:81708023 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g75 Blo01g01639 . . . Bpe02g00304 . . Bma01g02413 Cmo05g00990 . . . . . . . . Bhi04g01222 . . . . . . Cla08g00936 Cam08g1383 Cec08g0964 Cco08g1083 Clacu08g1090 . Cre08g0873 . . Cone17ag1462 . . . . Cme03g01335 . Blo18g00742 Bda11g00977 Bda01g01564 Bpe02g01758 . Bma01g00699 . . . . . Cma05g00970 Car05g00854 . Cpe11g00782 . . . . . . . . . . . . . . . Lsi08g00778 . Chy03g00609 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma02g00436 . 31 743 U-box Gene Family AT5G15400 75.5 2.1e-306 1048.5
Bma09g00589 . 1 781 U-box Gene Family AT3G54790 53.1 1.1e-134 477.6
Bma09g00003 CCT 195 824 U-box Gene Family AT2G23140 61.0 4.4e-105 379.0
Bma03g01129 CCT 194 765 U-box Gene Family AT2G23140 50.2 8.7e-69 258.5
Bma06g00574 BCT,CCT 1 756 U-box Gene Family AT1G24330 57.8 1.9e-235 812.4
Bma01g00018 BCT,CCT 1 779 U-box Gene Family AT1G24330 61.3 1.1e-222 770.0
Bma06g00574 BCT,CCT 1 758 U-box Gene Family AT1G67530 57.2 4.7e-234 807.7
Bma01g00018 BCT,CCT 1 638 U-box Gene Family AT1G67530 63.1 1.9e-219 759.2
Bma11g00359 . 1 365 U-box Gene Family AT4G21350 58.7 1.2e-115 413.3
Bma07g00336 . 1 359 U-box Gene Family AT4G21350 58.7 1.2e-115 413.3
Bma15g00525 . 134 457 U-box Gene Family AT3G07360 58.8 9.8e-77 283.9
Bma13g00879 . 1 197 U-box Gene Family AT3G07360 51.3 5.1e-49 191.8
Bma13g00880 . 18 145 U-box Gene Family AT3G07360 59.4 3.4e-37 152.5
Bma14g01592 . 240 454 U-box Gene Family AT1G71020 68.1 4.5e-78 288.9
Bma14g00501 CCT 254 421 U-box Gene Family AT1G71020 57.8 3.7e-48 189.5
Bma11g00122 CCT 255 417 U-box Gene Family AT1G71020 56.6 2.0e-46 183.7
Bma14g01592 . 1 656 U-box Gene Family AT1G23030 57.7 3.2e-121 432.6
Bma11g00122 CCT 89 633 U-box Gene Family AT2G28830 58.1 1.1e-97 354.4
Bma14g00501 CCT 92 422 U-box Gene Family AT2G28830 55.1 2.5e-91 333.2
Bma11g00122 CCT 1 626 U-box Gene Family AT3G46510 64.8 5.0e-144 508.4
Bma14g00501 CCT 1 421 U-box Gene Family AT3G46510 64.7 3.9e-141 498.8
Bma01g01714 . 9 660 U-box Gene Family AT5G01830 56.7 6.8e-197 684.1
Bma14g00979 . 1 715 U-box Gene Family AT1G29340 64.4 4.2e-229 791.2
Bma10g00130 . 8 384 U-box Gene Family AT3G52450 53.0 1.3e-111 400.2
Bma04g01537 . 1 281 U-box Gene Family AT3G52450 54.5 1.4e-78 290.4
Bma10g00130 . 8 382 U-box Gene Family AT2G35930 55.1 9.7e-114 407.1
Bma07g00208 . 3 400 U-box Gene Family AT2G35930 50.5 1.1e-112 403.7
Bma07g00213 . 3 400 U-box Gene Family AT2G35930 50.2 4.1e-112 401.7
Bma04g01537 . 1 280 U-box Gene Family AT2G35930 53.3 1.6e-76 283.5
Bma05g00512 . 1 416 U-box Gene Family AT3G19380 65.2 7.3e-149 523.9
Bma05g00512 . 1 412 U-box Gene Family AT1G49780 65.8 3.2e-152 535.0
Bma03g01153 . 1 449 U-box Gene Family AT3G49810 72.2 7.0e-182 633.6
Bma06g00334 . 1 450 U-box Gene Family AT3G49810 68.5 3.5e-173 604.7
Bma05g00028 . 1 450 U-box Gene Family AT3G49810 61.3 2.9e-151 531.9
Bma03g01153 . 1 449 U-box Gene Family AT5G65920 67.6 1.8e-166 582.4
Bma06g00334 . 1 450 U-box Gene Family AT5G65920 65.6 2.3e-161 565.5
Bma05g00028 . 1 450 U-box Gene Family AT5G65920 62.1 4.8e-151 531.2
Bma06g00885 . 1 310 U-box Gene Family AT2G19410 64.2 1.9e-118 423.7
Bma06g00885 . 52 310 U-box Gene Family AT4G25160 51.0 1.5e-68 258.1
Bma06g00200 . 23 498 U-box Gene Family AT5G40140 50.1 2.4e-59 226.9
Bma01g00699 CCT 4 813 U-box Gene Family AT1G76390 63.2 2.1e-277 951.8
Bma01g02413 CCT 13 814 U-box Gene Family AT1G76390 60.0 2.7e-261 898.3
Bma01g00699 CCT 7 813 U-box Gene Family AT1G20780 64.0 3.9e-284 974.2
Bma01g02413 CCT 14 811 U-box Gene Family AT1G20780 59.7 4.9e-263 904.0
Bma06g00574 BCT,CCT 1 758 U-box Gene Family AT1G27910 59.8 1.5e-248 855.9
Bma01g00018 BCT,CCT 1 781 U-box Gene Family AT1G27910 53.8 5.3e-222 767.7
Bma15g01111 . 1 599 U-box Gene Family AT5G67530 74.7 5.3e-262 900.2
Bma02g00753 BCT 1 524 U-box Gene Family AT1G04510 72.6 1.0e-224 776.2
Bma06g01616 BCT 2 520 U-box Gene Family AT1G04510 73.8 8.6e-224 773.1
Bma02g00753 BCT 1 488 U-box Gene Family AT2G33340 72.7 1.7e-210 728.8
Bma06g01616 BCT 2 484 U-box Gene Family AT2G33340 73.7 2.5e-209 724.9
Bma10g00429 . 10 279 U-box Gene Family AT3G07370 65.6 2.4e-103 372.1
Bma13g00881 . 7 277 U-box Gene Family AT3G07370 60.1 2.0e-94 342.4
Bma13g00876 . 7 275 U-box Gene Family AT3G07370 55.1 2.4e-79 292.4
Bma13g00877 . 1 196 U-box Gene Family AT3G07370 58.2 1.3e-64 243.4
Bma13g00875 . 1 196 U-box Gene Family AT3G07370 57.1 1.1e-63 240.4
Bma13g00874 . 1 196 U-box Gene Family AT3G07370 54.1 5.1e-58 221.5
Bma02g00436 . 31 743 U-box Gene Family AT5G15400 75.5 2.1e-306 1048.5
Bma09g00589 . 1 781 U-box Gene Family AT3G54790 53.1 1.1e-134 477.6
Bma09g00003 CCT 195 824 U-box Gene Family AT2G23140 61.0 4.4e-105 379.0
Bma03g01129 CCT 194 765 U-box Gene Family AT2G23140 50.2 8.7e-69 258.5
Bma06g00574 BCT,CCT 1 756 U-box Gene Family AT1G24330 57.8 1.9e-235 812.4
Bma01g00018 BCT,CCT 1 779 U-box Gene Family AT1G24330 61.3 1.1e-222 770.0
Bma06g00574 BCT,CCT 1 758 U-box Gene Family AT1G67530 57.2 4.7e-234 807.7
Bma01g00018 BCT,CCT 1 638 U-box Gene Family AT1G67530 63.1 1.9e-219 759.2
Bma11g00359 . 1 365 U-box Gene Family AT4G21350 58.7 1.2e-115 413.3
Bma07g00336 . 1 359 U-box Gene Family AT4G21350 58.7 1.2e-115 413.3
Bma15g00525 . 134 457 U-box Gene Family AT3G07360 58.8 9.8e-77 283.9
Bma13g00879 . 1 197 U-box Gene Family AT3G07360 51.3 5.1e-49 191.8
Bma13g00880 . 18 145 U-box Gene Family AT3G07360 59.4 3.4e-37 152.5
Bma14g01592 . 240 454 U-box Gene Family AT1G71020 68.1 4.5e-78 288.9
Bma14g00501 CCT 254 421 U-box Gene Family AT1G71020 57.8 3.7e-48 189.5
Bma11g00122 CCT 255 417 U-box Gene Family AT1G71020 56.6 2.0e-46 183.7
Bma14g01592 . 1 656 U-box Gene Family AT1G23030 57.7 3.2e-121 432.6
Bma11g00122 CCT 89 633 U-box Gene Family AT2G28830 58.1 1.1e-97 354.4
Bma14g00501 CCT 92 422 U-box Gene Family AT2G28830 55.1 2.5e-91 333.2
Bma11g00122 CCT 1 626 U-box Gene Family AT3G46510 64.8 5.0e-144 508.4
Bma14g00501 CCT 1 421 U-box Gene Family AT3G46510 64.7 3.9e-141 498.8
Bma01g01714 . 9 660 U-box Gene Family AT5G01830 56.7 6.8e-197 684.1
Bma14g00979 . 1 715 U-box Gene Family AT1G29340 64.4 4.2e-229 791.2
Bma10g00130 . 8 384 U-box Gene Family AT3G52450 53.0 1.3e-111 400.2
Bma04g01537 . 1 281 U-box Gene Family AT3G52450 54.5 1.4e-78 290.4
Bma10g00130 . 8 382 U-box Gene Family AT2G35930 55.1 9.7e-114 407.1
Bma07g00208 . 3 400 U-box Gene Family AT2G35930 50.5 1.1e-112 403.7
Bma07g00213 . 3 400 U-box Gene Family AT2G35930 50.2 4.1e-112 401.7
Bma04g01537 . 1 280 U-box Gene Family AT2G35930 53.3 1.6e-76 283.5
Bma05g00512 . 1 416 U-box Gene Family AT3G19380 65.2 7.3e-149 523.9
Bma05g00512 . 1 412 U-box Gene Family AT1G49780 65.8 3.2e-152 535.0
Bma03g01153 . 1 449 U-box Gene Family AT3G49810 72.2 7.0e-182 633.6
Bma06g00334 . 1 450 U-box Gene Family AT3G49810 68.5 3.5e-173 604.7
Bma05g00028 . 1 450 U-box Gene Family AT3G49810 61.3 2.9e-151 531.9
Bma03g01153 . 1 449 U-box Gene Family AT5G65920 67.6 1.8e-166 582.4
Bma06g00334 . 1 450 U-box Gene Family AT5G65920 65.6 2.3e-161 565.5
Bma05g00028 . 1 450 U-box Gene Family AT5G65920 62.1 4.8e-151 531.2
Bma06g00885 . 1 310 U-box Gene Family AT2G19410 64.2 1.9e-118 423.7
Bma06g00885 . 52 310 U-box Gene Family AT4G25160 51.0 1.5e-68 258.1
Bma06g00200 . 23 498 U-box Gene Family AT5G40140 50.1 2.4e-59 226.9
Bma01g00699 CCT 4 813 U-box Gene Family AT1G76390 63.2 2.1e-277 951.8
Bma01g02413 CCT 13 814 U-box Gene Family AT1G76390 60.0 2.7e-261 898.3
Bma01g00699 CCT 7 813 U-box Gene Family AT1G20780 64.0 3.9e-284 974.2
Bma01g02413 CCT 14 811 U-box Gene Family AT1G20780 59.7 4.9e-263 904.0
Bma06g00574 BCT,CCT 1 758 U-box Gene Family AT1G27910 59.8 1.5e-248 855.9
Bma01g00018 BCT,CCT 1 781 U-box Gene Family AT1G27910 53.8 5.3e-222 767.7
Bma15g01111 . 1 599 U-box Gene Family AT5G67530 74.7 5.3e-262 900.2
Bma02g00753 BCT 1 524 U-box Gene Family AT1G04510 72.6 1.0e-224 776.2
Bma06g01616 BCT 2 520 U-box Gene Family AT1G04510 73.8 8.6e-224 773.1
Bma02g00753 BCT 1 488 U-box Gene Family AT2G33340 72.7 1.7e-210 728.8
Bma06g01616 BCT 2 484 U-box Gene Family AT2G33340 73.7 2.5e-209 724.9
Bma10g00429 . 10 279 U-box Gene Family AT3G07370 65.6 2.4e-103 372.1
Bma13g00881 . 7 277 U-box Gene Family AT3G07370 60.1 2.0e-94 342.4
Bma13g00876 . 7 275 U-box Gene Family AT3G07370 55.1 2.4e-79 292.4
Bma13g00877 . 1 196 U-box Gene Family AT3G07370 58.2 1.3e-64 243.4
Bma13g00875 . 1 196 U-box Gene Family AT3G07370 57.1 1.1e-63 240.4
Bma13g00874 . 1 196 U-box Gene Family AT3G07370 54.1 5.1e-58 221.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006312 2 1 2 2 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 0 2 2 1 38