Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02415 AAAATGAGCTTGATTTGGTTTCTGTTGTCATTGTTCCTCAACTTCAAAATGTGGCCTTGCGGATGTAGTGAAAATATTTCTGGCTCTGTACCATCTGTTGTGAACATTGGAGCTATCTTCTCGTTTGAATCTACCATTGGTAAAGTTGCTAAAATTGCCATGGAGGAAGCTGTAAAAGATGTCAACTCCAACTCCACCATTCTCCATGGCAGAAAACTTTCTCTAAGAATGCAAAATTCCAATTGCAGTGGGTTTCTTGGAATGGTTGAAGGTACTTTGGCTTACTTCAGCGCTCCTTTGAATTTAGTATTCCAATCCTTTTCAAGAATTCTGATGGTTTTTTGTATTTCAGTTCTTCAATTCATGGAGACGGACAATGTTGCCATTATAGGTCCACAATCTTCTGTGGTTGCTCACATTGTATCCCACGTTGCAAATGAACTTCAAGTTCCTCTTCTTTCATTTGCAGCCACAGACCCAACACTTTCTTCGCTTCAATTTCCATACTTCGTTAGAACTACCCAGAGTGACTTGTTCCAAATGACTGCGGTTGCTGAGATTATTGATCATTATAATTGGAAAGAAATTATTGTTATTTTTATTGATGATGATTATGGACGGAATGGGATCGCTGCTTTAGATGATGAACTTGCAGAGAGGCGATGTAGAATATCCTATAAAAAGGGAATCAGCCCTGGTTCTCAAGTTAGTCGAGATGAAATTATTGATCTACTAATTAAAGTTGCAATGATGGAATCCCGAGTTGTTGTTCTCCATGTAAATCCTAGTTCAGGTTTCTTAATCTTTTCAGTGGCACAATACCTTGGAATGATGGGTAATGGATGTGTCTGGATAGCTACTGATTGGCTCTCATCTGTTTTAGATTCTGCATCTCCTCTCCCTTCTTACACCATGGATTCAATGCAAGGAGTTCTTGCTTTACGCCTACATACTGCAGATTCTGATAGAAAAAGTGAATTTTTGTCCCGGTGGCGCAAGTTAACTGGTGGTTCGTTGGGACTAAATTCTTATGCACTCTATGCTTATGATTCAGTTTGGCTGGCAGCTCATGCTATCGGTAACTTTTTGAAGCAGGGTGGAGTTATTTCATTTTCCAATGATTCCAGAATACATTCCGGAATCAGTGGCAATCTTAACCTTCAAGCACTGACCATTTTTGATGGTGGACCTGTCCTATTAAAGAACATACTCGAAAGCAATTTCATTGGTTTGACTGGTCCAGTTAAATTCAATTCTGATAGATCACTCGTTTTTCCGGCATATGACATCATTAATGTCATTGGGACCGGATATCGCCGAATTGGATACTGGTCAAACTACACTGGTTTGTCAACAGTTCCTCCAGAGACGCTTTATGATAAGCCACCAAATCGCTCAAGTGCAACGCAGCAGCTCTATGGCGTTCTCTGGCCAGGAGAGACTGTGGTAAAACCCCGTGGATGGGTCTTTCCAAATAATGGGAAAGAACTAAAAATTGGTGTGCCAAATCGGTTTAGTTACAGAGAATTTGTGTCACAAGTGCGAGGGACTGATGTGTTCAAGGGTTTTTGCATAGATGTCTTTGTAGCTGCTGTAAACCTCCTGCCATATGCTGTTCCATACCACTTTATTTCATTCGGGGATGGTAAAAAGAATCCAAGCTACACAGAGCTTGTGAGATTGATAACAACAGGCTATTTTGATGCGGCTGTTGGTGACATTGCGATAGTTACTAACCGAACAAAGATTGTGGATTTTACTCAGCCATATGCAGCATCTGGCCTTCTTGTTGTTGCCCCATTCAAAAAACTCAATACTGGTGCCTGGGCTTTCTTACGTCCATTTTCTGCACCTTTGTGGATTGTCACTGCTAGTTTCTTCCTTTTCATTGGTATAGTTGTTTGGATCATGGAGCATAGGATAAATGATGAGTTCAGGGGCCCACCTAAAAGACAAATAATAACCATTTTGTGGTTTAGCTTCTCTACCTTGTTTTTTGCCCACAAGGAGAACACTGTGAGCACGCTGGGCCGAATAGTGTTGCTTATTTGGCTCTTTGTTGTTTTGATAATCAATTCCAGCTACACTGCAAGTCTAACGTCAATTCTCACAGTCCAGCAGCTCTCTTCCCCAATTAGAGGAATTGAAAGCTTAAAGGAGGGTCATGAGACAATAGGATACCAAGTGGGATCTTTTGCCGAGTATTATTTGACCCAGGAGCTCAATATATCTCAATCCAGGCTTATTGCTCTTGGAACACCCGAAGAATATGCCAAGGCTCTGCAGCTTGGCCCTGCCAAGGGAGGAGTTGCTGCCATTGTCGACGAGCGCCCATATTTAGAACTATTCCTTTCAAGCCAATGTAAATACAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGCTGGGGCTTTGCCTTTCCTCGCGACTCTCCATTGGCTGTGGATATGTCAACTGCAATTTTGCAATTGTCTGAGAATGGCGATCTGCAGAGGATTCATGATAAATGGCTGAAGAAAAGCGCTTGCAGCTTAGATACAACTGAAATCGATTCAGACCAGCTTCATCTTCAGAGCTTCTTGGGACTCTTTCTTATTTGTGGTACAGCCTGTTTCATTGCCATCATCATATATTTTATTCAGATTATCAAACAGCTGCGCCATGCTCCACCCACCGAATCTATTTCTAGCGGTCAGGGTAGTTCACTTTCTGGCCGTCTCGGACGGCTTTGGTCAAAATTGGACCAGAAGGAAAGTGATTCCAACAGTCGCAGCAAAAGAAGGAAACTGGAAGGATCTTTACCTCATCAGCATGATAATGGTGATTTATTTGCCGAAAGTTCCACTAGGAGACAGACACAATCAATTAGCGGGAACAACTTGTAA 2883 41.8 KMSLIWFLLSLFLNFKMWPCGCSENISGSVPSVVNIGAIFSFESTIGKVAKIAMEEAVKDVNSNSTILHGRKLSLRMQNSNCSGFLGMVEGTLAYFSAPLNLVFQSFSRILMVFCISVLQFMETDNVAIIGPQSSVVAHIVSHVANELQVPLLSFAATDPTLSSLQFPYFVRTTQSDLFQMTAVAEIIDHYNWKEIIVIFIDDDYGRNGIAALDDELAERRCRISYKKGISPGSQVSRDEIIDLLIKVAMMESRVVVLHVNPSSGFLIFSVAQYLGMMGNGCVWIATDWLSSVLDSASPLPSYTMDSMQGVLALRLHTADSDRKSEFLSRWRKLTGGSLGLNSYALYAYDSVWLAAHAIGNFLKQGGVISFSNDSRIHSGISGNLNLQALTIFDGGPVLLKNILESNFIGLTGPVKFNSDRSLVFPAYDIINVIGTGYRRIGYWSNYTGLSTVPPETLYDKPPNRSSATQQLYGVLWPGETVVKPRGWVFPNNGKELKIGVPNRFSYREFVSQVRGTDVFKGFCIDVFVAAVNLLPYAVPYHFISFGDGKKNPSYTELVRLITTGYFDAAVGDIAIVTNRTKIVDFTQPYAASGLLVVAPFKKLNTGAWAFLRPFSAPLWIVTASFFLFIGIVVWIMEHRINDEFRGPPKRQIITILWFSFSTLFFAHKENTVSTLGRIVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIRGIESLKEGHETIGYQVGSFAEYYLTQELNISQSRLIALGTPEEYAKALQLGPAKGGVAAIVDERPYLELFLSSQCKYRVVGQEFTKSGWGFAFPRDSPLAVDMSTAILQLSENGDLQRIHDKWLKKSACSLDTTEIDSDQLHLQSFLGLFLICGTACFIAIIIYFIQIIKQLRHAPPTESISSGQGSSLSGRLGRLWSKLDQKESDSNSRSKRRKLEGSLPHQHDNGDLFAESSTRRQTQSISGNNL 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81763424 81766867 + Bma003288.2 Bma01g02415 76932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02415 960 CDD PBP1_GABAb_receptor_plant 35 454 IPR044440 -
Bma01g02415 960 Pfam Bacterial extracellular solute-binding proteins, family 3 520 838 IPR001638 -
Bma01g02415 960 Gene3D - 787 844 - -
Bma01g02415 960 PIRSF IGluLR_plant 101 959 IPR017103 -
Bma01g02415 960 PIRSF IGluLR_plant 1 94 IPR017103 -
Bma01g02415 960 SUPERFAMILY Periplasmic binding protein-like II 473 840 - -
Bma01g02415 960 CDD GluR_Plant 495 837 - -
Bma01g02415 960 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 110 953 - -
Bma01g02415 960 SUPERFAMILY Periplasmic binding protein-like I 29 488 IPR028082 -
Bma01g02415 960 Pfam Ligand-gated ion channel 839 870 IPR001320 GO:0015276|GO:0016020
Bma01g02415 960 Gene3D - 492 607 - -
Bma01g02415 960 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 24 89 - -
Bma01g02415 960 Gene3D - 608 750 - -
Bma01g02415 960 MobiDBLite consensus disorder prediction 945 960 - -
Bma01g02415 960 Gene3D - 176 450 - -
Bma01g02415 960 Pfam Receptor family ligand binding region 52 435 IPR001828 -
Bma01g02415 960 MobiDBLite consensus disorder prediction 914 935 - -
Bma01g02415 960 Gene3D - 52 425 - -
Bma01g02415 960 SMART GluR_14 498 839 IPR001320 GO:0015276|GO:0016020
Bma01g02415 960 MobiDBLite consensus disorder prediction 914 960 - -
Bma01g02415 960 PRINTS Metabotropic glutamate GPCR signature 196 213 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bma01g02415 960 PRINTS Metabotropic glutamate GPCR signature 62 81 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bma01g02415 960 PRINTS Metabotropic glutamate GPCR signature 180 196 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bma01g02415 960 PRINTS Metabotropic glutamate GPCR signature 129 155 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bma01g02415 960 PRINTS Metabotropic glutamate GPCR signature 161 180 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bma01g02415 960 PANTHER GLUTAMATE RECEPTOR 3.3 24 89 - -
Bma01g02415 960 PANTHER GLUTAMATE RECEPTOR 3.3 110 953 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02415 Bma-Chr1:81763424 Bma12g00800 Bma-Chr12:37363190 0 dispersed
Bma01g02415 Bma-Chr1:81763424 Bma02g00328 Bma-Chr2:4485146 7.59E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02415 K05387 - jre:109011487 1402.88