Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02416 ATGGCCACTCATGCAGCTCTCTCTTCCAGAGTTCCAGCAAACACGAGGCTTCCGTCCAAAAGCTTTCACTCTTTCCCCACTCAATGCTCTCTCTCAAAGAGGCTTGAAGTGGCTGACTTTTCTGGGCTGAGGTCTACATCTTTGCCATTCGTTCAAAATACCAGAGAGCGGGCAACCTTCTTTGACGTTGTGGCAGCTCAGGTTACTCCAAAGACAGCGGTAGGATCGTCTCCGTGTAAAGGAGAAACAGTTGCAAAACTGAAGGTTGCAATCAATGGATTCGGACGCATTGGCCGGAACTTCCTCCGGTGCTGGCACGGCCGGAAAAACTCACCCATCGAAGTTGTGGTCGTCAATGACAGTGGTGGCGTCAAGAACGCTTCTCACTTGCTGAAATACGATTCTTTGCTTGGAACCTTCAAAGCGGATGTTAAGATCGTTGACAATGAAACCATCAGCGTTGATGGAAAACCCATCAAGGTTGTTTCTAGCAGGGACCCTCTCAAGCTTCCATGGGCTGAGCTTGGCATTGACATTGTCATTGAAGGAACTGGCGTGTTTGTCGACGGGCCAGGCGCGGGGAAACACATTCAAGCAGGTGCGAAGAAGGTCATCATCACAGCTCCAGCTAAAGGAGCTGACATTCCGACATATGTCATTGGAGTGAACGAGAAAGATTACTCTCACGATGTGGCAAACATCATCAGTAATGCTTCTTGCACGACAAACTGTCTTGCTCCATTCGTTAAGGTGTTGGACGAAGAATTTGGCATTGTGAAGGGTACCATGACAACAACTCACTCCTATACTGGCGATCAGAGACTCTTGGATGCTTCACACCGTGACTTGAGGCGAGCCAGGGCTGCAGCTCTGAACATAGTCCCGACAAGTACTGGGGCAGCCAAGGCAGTGTCGCTTGTGCTGCCGCAGCTCAAGGGCAAGCTCAATGGCATTGCACTTCGTGTGCCTACTCCTAATGTTTCAGTGGTGGATTTGGTGGTCAATGTGGCAAAGAAGGGCATCTCGGCAGAGGACGTGAATGCAGCCTTCAGGAAGGCTGCTGAAGGGCCGTTGAAGGGCGTTTTGGATGTCTGTGATGCCCCCCTCGTGTCCGTGGATTTCAGGTGCTCAGATGTCTCCTCCAGCATTGACTCTTCTTTGACCATGGTAATGGGTGACGATATGGTTAAGGTTGTTGCCTGGTATGACAATGAGTGGGGATATAGCCAAAGGGTGGTTGATTTGGCACATTTGGTGACTAGCAAGTGGCCAGGCATTGCGGCAGCTGCAGTTGGCGGAGACCCATTGGAAGATTTCTGCCAGGACAACCCTGCCGACGAAGAGTGCAAGGTCTACGAAGCT 1362 50.88 MATHAALSSRVPANTRLPSKSFHSFPTQCSLSKRLEVADFSGLRSTSLPFVQNTRERATFFDVVAAQVTPKTAVGSSPCKGETVAKLKVAINGFGRIGRNFLRCWHGRKNSPIEVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVIGVNEKDYSHDVANIISNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGVLDVCDAPLVSVDFRCSDVSSSIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVTSKWPGIAAAAVGGDPLEDFCQDNPADEECKVYEA 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81767148 81769146 - Bma030302 Bma01g02416 76933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02416 454 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 86 256 IPR036291 -
Bma01g02416 454 Pfam CP12 domain 434 453 - -
Bma01g02416 454 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 196 209 IPR020831 GO:0016620
Bma01g02416 454 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 261 277 IPR020831 GO:0016620
Bma01g02416 454 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 317 334 IPR020831 GO:0016620
Bma01g02416 454 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 358 373 IPR020831 GO:0016620
Bma01g02416 454 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 234 252 IPR020831 GO:0016620
Bma01g02416 454 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 245 402 IPR020829 GO:0016620
Bma01g02416 454 Gene3D Dihydrodipicolinate Reductase; domain 2 239 404 - -
Bma01g02416 454 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 88 414 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Bma01g02416 454 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 1 454 IPR020831 GO:0016620
Bma01g02416 454 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 240 403 - -
Bma01g02416 454 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 88 189 IPR020828 GO:0051287
Bma01g02416 454 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 238 245 IPR020830 GO:0016620
Bma01g02416 454 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC 1 454 - -
Bma01g02416 454 Gene3D - 88 416 - -
Bma01g02416 454 SMART gp_dh_n_7 87 240 IPR020828 GO:0051287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02416 K05298 GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13] - zju:107419772 751.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01236 Bma-Chr1:15546673 Bma01g02416 Bma-Chr1:81767148 1.08E-21 dispersed
Bma01g02416 Bma-Chr1:81767148 Bma14g01359 Bma-Chr14:25267600 1.03E-103 dispersed
Bma01g02416 Bma-Chr1:81767148 Bma02g00661 Bma-Chr2:18754875 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g68 Blo01g01643 . . . Bpe02g00301 . . Bma01g02416 . . Cma01g02029 Cma09g00036 Car01g01596 . . Cpe06g00010 . . . . . . . . . . . . . . . . . Cone17ag1465 Cone20ag0011 Lsi04g01828 Csa04g02722 . . . . Bda11g00981 . . . . . Sed01g2415 Cmo01g02084 Cmo09g00037 . . . Car09g00031 . . Bhi09g02843 Tan01g5131 Cmetu07g0789 . Hepe01g2355 Mch11g0042 . Cla11g01837 Cam11g1904 Cec11g1931 Cco11g1940 Clacu11g2068 Cmu11g1874 Cre11g2282 . . Chy07g00409 Cme07g00039
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007528 1 1 1 1 1 0 2 0 0 1 1 1 2 1 1 2 0 2 1 1 1 1 1 1 1 1 1 3 1 1 32