Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02425 ATGGAATATGAAGAAGACGACGTTACTGAACATGTTGACTTTGGTAATTTCTTCGATGAATGTACTGAGGGTACCGATTTGTTGACTATGGATCCTACGGTTTCTCAAGATCCTTCTTTGGGCGATCGTTTTTGGAACCCCTCTTCTTCTTTTTCTGATCCCTCTTGGATCAACCAGATGGAGAACATGCTCATGCAGGAAGATGGCAACGGTGCTATTTCGGATTCTGCGAAGGAGTTCTGTGATACCTTTTTGGCTGATGTACTTGTTGATTGTGGGGAAGAGGGTTCCAGTGAAATCGTTGATTCTCCTGTCGATTTGGTTCTCTCTGCTTCCGAGGATGATAAGTGTCACGATTCGAATAAGGAGAATGTCGATGAAGCAGATGCTAACGATAACGAGAGTGGAAAGGCAGATGCCAATGATCCTATCTCCAAGAAACGAAGAAGGCAGCAGAGAAATAGGGATGCTGCAGTCAGATCGAGGGAGAGGAAAAAGTCTTACGTGAAGGATCTAGAGATAAAGAGTAGGTATCTCGAAGGAGAATGCAGGAGACTTGGGCGTTTGCTCCAGTGTTGCTATGCTGAAAATCAAGCTTTACGACATAATTTACGTATGGGCTTTGGGTCTGTTGCTTCCGTGGCCAAGCAGGAGTCTGCCGTGCTCTTGTTGGAATCCCTGCTGTTGGGTTCCCTGCTATGGTTCATGGGAGTAATGTGCCTGTTCACTCTGCCCAAAATCCCCCACCCAATTCTAGAACCAGTTCGGGTGGAAAGTGTGGTGGGAGAGCAAGAAAAACTGGGTCCAAGAGGGGGACTAAGTAAGAGCCAGGATCCATCTTTTGGAAGAAGCAGAAGATGCCGATCAGCGAGGATAAAGATGAAACCTTTGTTTTTTGATTACCTGATATAG 912 45.83 MEYEEDDVTEHVDFGNFFDECTEGTDLLTMDPTVSQDPSLGDRFWNPSSSFSDPSWINQMENMLMQEDGNGAISDSAKEFCDTFLADVLVDCGEEGSSEIVDSPVDLVLSASEDDKCHDSNKENVDEADANDNESGKADANDPISKKRRRQQRNRDAAVRSRERKKSYVKDLEIKSRYLEGECRRLGRLLQCCYAENQALRHNLRMGFGSVASVAKQESAVLLLESLLLGSLLWFMGVMCLFTLPKIPHPILEPVRVESVVGEQEKLGPRGGLSKSQDPSFGRSRRCRSARIKMKPLFFDYLI 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81883097 81885340 - Bma003296.1 Bma01g02425 76942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02425 303 MobiDBLite consensus disorder prediction 113 149 - -
Bma01g02425 303 CDD bZIP_HY5-like 156 198 - -
Bma01g02425 303 MobiDBLite consensus disorder prediction 113 163 - -
Bma01g02425 303 Pfam bZIP transcription factor 146 201 IPR004827 GO:0003700|GO:0006355
Bma01g02425 303 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 149 164 IPR004827 GO:0003700|GO:0006355
Bma01g02425 303 SUPERFAMILY Leucine zipper domain 146 203 IPR046347 GO:0003700|GO:0006355
Bma01g02425 303 Gene3D - 145 206 - -
Bma01g02425 303 PANTHER BZIP TRANSCRIPTION FACTOR 60 10 298 - -
Bma01g02425 303 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 144 186 IPR004827 GO:0003700|GO:0006355
Bma01g02425 303 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 10 298 - -
Bma01g02425 303 SMART brlzneu 141 206 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02425 - - - jre:109000523 256.529
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02425 Bma04g00305 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02425 Bma-Chr1:81883097 Bma01g02698 Bma-Chr1:84427727 7.85E-06 dispersed
Bma01g02425 Bma-Chr1:81883097 Bma04g00305 Bma-Chr4:2420406 1.64E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g32 Blo01g01654 Blo12g00839 . . Bpe02g00289 . Bma04g00305 Bma01g02425 . . . Cma09g00015 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02428 Csa04g02744 . . . . . . . . . . . . Cmo09g00014 . . . Car09g00014 . . . . . . . . . Cla11g01858 Cam11g1925 Cec11g1952 Cco11g1964 Clacu11g2090 Cmu11g1893 Cre11g2301 . . Chy07g00432 Cme07g00018
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012243 1 1 1 2 1 0 1 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 0 1 2 1 1 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56806 PF00170 bZIP_1 1.70E-08 CL0018 Bma TF