Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02428 ATGAGTCTGCAGAAGGATGGCCACCTTCTTGGAGCTTTATCGCTATTGATTGCAGTGCAGATGGCGGCAGTAATGGCGGACGACGCCATATCGGGATGCCCGTCGAAATGCGGGAACGTAACGATTCCATATCCCTTCGGCGTCGGAGTGGGATGCCATTTGGGAGAAGGGTTCGACATAGCTTGCAATACTTCCTTCGATCCACCGAAACCATTCGTCGAAAATTTGGAAATCAAAGAAATATCTATGAATCAGCTGCGAATTAAAAACTGGGTGGCTTTCAATTGCTACGCCGAATCCGGGGCTCAAATCGCATGGTCCCCGGCTTCTATCAATCTGGGCAATCGCCCTTTCGTCTTCTCCTCTGCAAATGCCTTCACTGTCGTTGGGTGCGACACCTTGGCCTTGATTCAGGGTTTGCCGGGGTTCGATTACACCAGTGGCTGCGTTTCCCTCTGCGCAAGCAAGAACGAAGTCACTAATGGCTCCTGCTCTGGTATTGGGTGCTGCCAGACTTCAATTCCCAGAGGGCTTAAGACCTTCCAAACTGCCATAGGTAACCTCAACAATCACACCAAGACCTGGAAGTATAATCCTTGCAGCTACGCTTTTTTGGCCGACAGACAAGCTTACACCTTCGAGGTCTCCGATCTGGGCGATCCTAGTTTTTTAGCGACTGTTAAGAATGATATCCCAGTTGTTCTTGAATGGTCCGTGGGGGTCAGTACCTGCGAGGATGCCCGAAATGGGTTGGCCCCGTTTGTTTGCCAGAACAATTCTGAATGCTACGATTCAGAAAATGGTCCTGGCTATCTCTGCCGCTGCTCCCAAGGTTATCAAGGCAACCCCTATCTCTCCCCGGGATGCCAAGATGTCGACGAGTGCGATGGCCCAAACAATCCCTGCGAAGGAATCTGCGTCAATACGCCGGGAAGTTATTACTGCGCTTGCCCCAAGGGAAGCTATGGCGACGGTACAAAAAGCGGCAAGGGCTGCATAAAAAAGAATGTTCGATTTCCGCTGATCCAAGTTAGTCTCGGCGTAAGCTTCGGTTTCTTGTCTCTGATCATCGGATCTTCTTTACTATACTTCAGCCTGAAAAAAAGGCACCTCGTTAAACTCAGAGAGAAGTTCTTCAAGGAGAATGGAGGATTGCTTTTGCAGCAGCAATTAGCCGGCCGTGAAGGTGGCGTAGATCAGTCGTCTAGAATCTTTACGGCGGAGGAGCTTGAGAAGGCTACCGATAACTACTCAGAGAGCCGAGTGCTCGGAAGGGGAGGCAATGGAACAGTTTACAAAGGAATTTTACCAGACAATAAGATCGTTGCCATAAAGAAGTCTAAAATTGCAGGGGAGAGCCAAATGGAGCAGTTCATAAACGAAGTCGTCATGCTCACCCAAATCAATCACCGGAACGTGGTGAAGCTCCTCGGCTGCTGTCTTGAGACGGAGGTCCCGCTTCTGGTTTATGAATACGTCTCGAACGGAACTCTATTTTACCACATCCACCACCGTAATAGCAGTATCAACTCCATGTCGTGGGACCACCGCCTGAGAATAGCCACTGAAACTGCTTCGGCCCTCTCCTACCTCCACTCTGCCGCTTCCATTCCGATCATTCACCGGGACGTCAAGTCGGCAAATATTTTGTTGGACTCCAAATGCACTGCCAAAGTAGCTGATTTTGGAGCTTCCAAGTTTATTCCTATCGAACAGTCTTAG 1722 49.71 MSLQKDGHLLGALSLLIAVQMAAVMADDAISGCPSKCGNVTIPYPFGVGVGCHLGEGFDIACNTSFDPPKPFVENLEIKEISMNQLRIKNWVAFNCYAESGAQIAWSPASINLGNRPFVFSSANAFTVVGCDTLALIQGLPGFDYTSGCVSLCASKNEVTNGSCSGIGCCQTSIPRGLKTFQTAIGNLNNHTKTWKYNPCSYAFLADRQAYTFEVSDLGDPSFLATVKNDIPVVLEWSVGVSTCEDARNGLAPFVCQNNSECYDSENGPGYLCRCSQGYQGNPYLSPGCQDVDECDGPNNPCEGICVNTPGSYYCACPKGSYGDGTKSGKGCIKKNVRFPLIQVSLGVSFGFLSLIIGSSLLYFSLKKRHLVKLREKFFKENGGLLLQQQLAGREGGVDQSSRIFTAEELEKATDNYSESRVLGRGGNGTVYKGILPDNKIVAIKKSKIAGESQMEQFINEVVMLTQINHRNVVKLLGCCLETEVPLLVYEYVSNGTLFYHIHHRNSSINSMSWDHRLRIATETASALSYLHSAASIPIIHRDVKSANILLDSKCTAKVADFGASKFIPIEQS 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81951047 81952977 + Bma003299.1 Bma01g02428 76945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02428 573 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE 26 572 - -
Bma01g02428 573 ProSitePatterns Calcium-binding EGF-like domain signature. 291 315 IPR018097 GO:0005509
Bma01g02428 573 SUPERFAMILY Protein kinase-like (PK-like) 401 571 IPR011009 -
Bma01g02428 573 Pfam Protein kinase domain 417 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02428 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Bma01g02428 573 SMART serkin_6 417 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02428 573 Gene3D Transferase(Phosphotransferase) domain 1 493 573 - -
Bma01g02428 573 Gene3D Laminin 241 293 - -
Bma01g02428 573 Pfam Wall-associated receptor kinase galacturonan-binding 33 85 IPR025287 GO:0030247
Bma01g02428 573 CDD EGF_CA 291 324 - -
Bma01g02428 573 SMART egfca_6 291 333 IPR001881 GO:0005509
Bma01g02428 573 Pfam Calcium-binding EGF domain 291 322 IPR001881 GO:0005509
Bma01g02428 573 Pfam Wall-associated kinase 162 276 IPR013695 GO:0004674|GO:0016021
Bma01g02428 573 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 306 317 IPR000152 -
Bma01g02428 573 ProSitePatterns Protein kinases ATP-binding region signature. 423 446 IPR017441 GO:0005524
Bma01g02428 573 SMART egf_5 294 333 IPR000742 -
Bma01g02428 573 SMART egf_5 243 290 IPR000742 -
Bma01g02428 573 ProSiteProfiles EGF-like domain profile. 240 290 IPR000742 -
Bma01g02428 573 ProSiteProfiles Protein kinase domain profile. 417 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02428 573 Gene3D Laminin 294 334 - -
Bma01g02428 573 SUPERFAMILY EGF/Laminin 289 334 - -
Bma01g02428 573 ProSiteProfiles EGF-like domain profile. 291 327 IPR000742 -
Bma01g02428 573 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 572 IPR045274 GO:0007166
Bma01g02428 573 Gene3D Phosphorylase Kinase; domain 1 393 492 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02428 Bma-Chr1:81951047 Bma02g00195 Bma-Chr2:1831481 1.59E-177 dispersed
Bma01g02428 Bma-Chr1:81951047 Bma02g01002 Bma-Chr2:50829937 5.64E-146 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66304 PF00069 Pkinase 1.40E-33 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02428 - - csv:101219978 804.283