Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02439 ATGGCGGAGCTGAGGATGGTTTCGTTGTCTGTTCTGTTGATGGTGTTTCTGGGTGCAGTTTCTGGGCAGGATGGAGATCCGTTTCCGCAAGTTGGAGGGAGGAGAGAGATGGTTCCTGCTATGTTTATATTCGGAGACTCGCTCATTGACAATGGAAATAACAATAACCTTCCTTCCTTTGCAAAAGCTAACTACTTTCCTTATGGCATCGACTTCAATGGCGGACCCACTGGTCGTTTTTCCAATGGCTACACCATTGTTGATGAAATAGCTGAGCTGTTGGGGCTTCCATTAATTCCTCCATTTTCTGAAGCATCTGGGAACCAAGTTCTTCACGGTGTCAACTACGCTTCTGCTGCAGCTGGAATTCTCGACGAGACCGGGAGAAACTTTGTGAGTCGGATTCCGTTCAATCAACAAATAAGCAACTTTCAGAACACCCTCGACCAGATCACCAACAGTCTTGGAGGTCCAGATAATATCGCAAGAGCCATCGGACGGTCCATATTCTTTATCGGAATGGGTAGTAATGACTACTTAAACAACTACCTGATGCCTAATTACAACACGAAAAACCAGTATAATGGTCCACAGTTCGCCAATCTTTTGGTTCAGCAATTCTCCCAGCAGCTAACTAGACTATATAATCTTGGAGCAAGGAAATTTGTAGTGGCTGGTGCGGGGCAGATGGGTTGCATTCCAAGCATATTAGCTCAGAGCCCAGTTGGAAGCTGCTCAGAAGAAGTAAACCAGCTCATTCTAAATTTCAATACTAATGTCAAGGCAATGGTCAACAATCTCAACGCCAATCTCCCCGGCTCTCGATTTACTTACCTCGACATTGCTAGAATCTCTCTTCTGCTAGATCGGAGTACTCAGAAATGTACACGTGCAGGATTCAGCGTGATAAACAGAGGATGCTGTGGAATTGGAAGGAACAGAGGGCAAATAACTTGTCTGCCATTTCAGACGCCATGTCCAAACAGAGATCAATATGTTTTTTGGGACGCGTTTCATCCGACAGAAGCTGTCAACATTATAATGGGGAGGAAGGCTTTTAATGGAGACACTAGCGTGGTTTATCCTATCAACATAGAGCAGCTTTCCAATCTTTGA 1116 44.89 MAELRMVSLSVLLMVFLGAVSGQDGDPFPQVGGRREMVPAMFIFGDSLIDNGNNNNLPSFAKANYFPYGIDFNGGPTGRFSNGYTIVDEIAELLGLPLIPPFSEASGNQVLHGVNYASAAAGILDETGRNFVSRIPFNQQISNFQNTLDQITNSLGGPDNIARAIGRSIFFIGMGSNDYLNNYLMPNYNTKNQYNGPQFANLLVQQFSQQLTRLYNLGARKFVVAGAGQMGCIPSILAQSPVGSCSEEVNQLILNFNTNVKAMVNNLNANLPGSRFTYLDIARISLLLDRSTQKCTRAGFSVINRGCCGIGRNRGQITCLPFQTPCPNRDQYVFWDAFHPTEAVNIIMGRKAFNGDTSVVYPINIEQLSNL 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82017806 82019355 - Bma003310.1 Bma01g02439 76956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02439 371 CDD SGNH_plant_lipase_like 39 356 IPR035669 -
Bma01g02439 371 PANTHER OS05G0419800 PROTEIN 6 371 - -
Bma01g02439 371 SUPERFAMILY SGNH hydrolase 161 351 - -
Bma01g02439 371 Pfam GDSL-like Lipase/Acylhydrolase 42 350 IPR001087 GO:0016788
Bma01g02439 371 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 6 371 - -
Bma01g02439 371 Gene3D SGNH hydrolase 33 356 IPR036514 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02439 - - - rcu:8263240 572.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02439 Bma-Chr1:82017806 Bma14g00972 Bma-Chr14:11358174 2.35E-122 dispersed
Bma08g00071 Bma-Chr8:885030 Bma01g02439 Bma-Chr1:82017806 2.25E-24 dispersed
Bma02g00298 Bma-Chr2:3466329 Bma01g02439 Bma-Chr1:82017806 5.30E-29 transposed
Bma15g00125 Bma-Chr15:1392258 Bma01g02439 Bma-Chr1:82017806 6.19E-24 transposed
Bma01g02439 Bma-Chr1:82017806 Bma04g00316 Bma-Chr4:2525723 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1661 . . . . . . . Bma01g02439 . . . . Car01g00778 . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00039 . . . . . . . . . . . . . . . . Cpe02g01018 . . . . . . . Cla11g00844 Cam11g0875 Cec11g0875 Cco11g0870 Clacu11g0987 Cmu11g0838 Cre11g1319 Lsi08g00048 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002428 2 2 3 2 3 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 2 3 61