Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02441 ATGGAGGAGTGCAGTGGTAATGGCGGTGGACGTTCTCCTCCCACTTACAAAGGAGTCAGGAGGAGAAAATGGGGCAAATGGGTATCCGAAATTCGAGAGCCTGGAAAGAAGACCCGAATATGGCTCGGGAGTTATGAGGCGCCGGAAATGGCCGCCGCAGCCTACGACGCGGCGGCTTTACACCTAAAAGGATCAGGGACTCACCTCAATTTCCCTGAGTTGGAGGAGAGCCTACCTCGCCCGGCGAGTTCCAGGCCTGAAGATATTCAACTCGCGGCTCAAGAAGCAGCATTGCGGTTCAGAAAACCGGCGAGCTTTTCTACGTTGTCGCCAATGGACGAGTCGGGAGGAGAGAGAAACGTTCCGGCTGTGAGAGTGGGTCTGTCGGCGAGCCAAATTCAGGCGATCAACGACTGGCCGTTGAATTCTCCGACTATGTGGATGCAAATGTGTGAAAACGAGTGCAGTAATAGCAAACTGTGGAATACGGAGTGGGAAGAAGAGACGAGGCAGTGTCAATACGATCAGTCTCAGTCAATATGGGATTATTAA 552 52.72 MEECSGNGGGRSPPTYKGVRRRKWGKWVSEIREPGKKTRIWLGSYEAPEMAAAAYDAAALHLKGSGTHLNFPELEESLPRPASSRPEDIQLAAQEAALRFRKPASFSTLSPMDESGGERNVPAVRVGLSASQIQAINDWPLNSPTMWMQMCENECSNSKLWNTEWEEETRQCQYDQSQSIWDY 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82036124 82036675 + Bma003311.1 Bma01g02441 76958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02441 183 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Bma01g02441 183 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Bma01g02441 183 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Bma01g02441 183 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Bma01g02441 183 MobiDBLite consensus disorder prediction 1 20 - -
Bma01g02441 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 15 181 - -
Bma01g02441 183 SUPERFAMILY DNA-binding domain 15 72 IPR016177 GO:0003677
Bma01g02441 183 Pfam AP2 domain 14 64 IPR001471 GO:0003700|GO:0006355
Bma01g02441 183 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Bma01g02441 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 181 - -
Bma01g02441 183 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02441 Bma-Chr1:82036124 Bma05g00749 Bma-Chr5:43958112 1.02E-34 dispersed
Bma01g02441 Bma-Chr1:82036124 Bma07g00513 Bma-Chr7:6393305 3.43E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56807 PF00847 AP2 1.30E-13 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02441 - - twl:120007866 189.504