Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02446 ATGTCTCTGAATATGAAAACTCTGACCCAAGCGCTTGCCAAGACCGCCGCGGTAATTGAGAAAACCGTGCAGACGACTGTTCAGGAGGTTACCGGACCTAAGCCTCTTCAGGATTATGAACTTCTTGATCAGATCGGCTCTGCTGGGCACGGTCTCGCGTGGAAATTGTACTCCGCCAAGCCCGCACGTGAGTCTACGCGACCACAGCAGTACCCCACGGTCTGCGTTTGGGTGCTGGATAAGAAGGCTTTATCCGAGGCTCGTGTGCGGGCGGGGCTGTCCAAAGCAGCCGAGGATGCGTTTTTGGATCTGATTCGCGCAGATGCGGGGCGATTGGTGAGGTTGAGGCACCCGGGAGTGGTGCATGTGGTGCAGGCACTGGACGAGAACAAGAATGCCATGGCTATGGTGACCGAGCCATTGTTCGCGTCGGTGGCTAATGTCCTCGGGAATGTCGAAAATGTTGCTAAAGTGCCTAAGGATCTCAAGGACATGGAAATGGGATTGTTGGAGATGAAGCATGGTTTGCTTCAAGTAGCAGAATCCTTGGATTTTCTTCATAACAATGCACGACTTATTCATAGATCTTTAGCACCTGAGAATGTTCTTATTACTTCAAATGGAGCTTGGAAACTAGCTGGATTTGGTTTTGCAATTTCAGCAGAACAAAATTCAGCCGATGCAACTAATATACAAGCTTTTCATTATACAGAATATGATGTTGAGGATTCTATATTGCCACTTCAGCCATCACTGAATTACACTGCTCCTGAATTGGTGAGGAGCAAATCATCATCAGCTGGATGTCCTTCTGATATTTTCAGTTTTGGATGCATTACTTACCATTTGATTGCTCGAAAACCTCTATTTGATTGCCACAACAATGTCAAAATGTACACGAATTCTCTGACATATTTATCCAATGAGGCTTTCTCTCGTATTCCACCGGATTTAGTTCCAGACTTGCAAAAAATGCTCTCTGCCAATGAATCTTTCCGTCTGACAGCAATGGATTTCACTGCTTCTCCATTTTTTCGAGATGACACAAGGTTGCGGGCACTTCGTTTCCTTGACCACATGCTTGAAAGAGATAATATGCAGAAGTCAGAGTTTTTAAAAGCTCTATCAAGCATGTGGAAAGATTTTGATTCTCGAGTACTGCGGTATAAGGTTCTTCCACCTCTTTGTGCTGAACTTCGTAATTTGGTAATGCAATCAATGATTCTTCCCATGGTTCTTACAATAGCAGAATCTCAGGATAAAAATGATTTTGAGCTATCGACACTCCCAGCCCTTGTTCCTGTTCTTAGTACTGCTTCTGGCGATACACTTTTGCTACTCGTGAAACATGCAGAGCTGATAATCAATAAGACTAGCCAGGAGCAGTTAGTAGCTCATGTTCTTCCATTGATTGTTCGAGCTTATGATGATAATGATGCTCGTATTCAAGAGGAAGTTTTGAGAAGATCTTCATCCCTTGCTAAGCAGCTTGATCTTCAGCTGGTGAAACAAGCAGTTTTGCCTCGTGTTCATGGCTTAGCTCTCAAGACAACAGTTGCTGCGGTCAGAGTCAATGCTTTGTTGTGCTTGGGAGATTTGGTTAATACGCTTGATAAACACGCAGTTCTAGACATCTTGCAAACTATTCAACGCTGTACGGCAGTTGATCGTTCTGCACCTACACTTATGTGCACACTTGGTGTTGCAAACTCGATTCTGAAGCAGCATGGAGTAGAGTTTGTTACCGAGCATGTACTCCCGCTGCTCATGCCCCTACTAACTGCTCAACAGTTGAATGTTCAGCAGTTCGCAAAATATATGCTGTTTGTCAAGGACATTCTCAGGAAGATAGAAGAAAAGCGGGGGGTGATTTTGACTGATTCTGGAATGCCAGAGGTAAAATCATCTGTTGCCTCTAATGGGAGTCAGTTCCAATCAGTCCTAACAAGCATATGGGTACTGTGCCTTCTACTACAAAGAGCAGTCCGGCCTGGGACGAAGACTGGGGACCTACTGCTAGGGGAACTAATTCTCAACAAATGTCTACAAATATTCCTGCTTTGA 2064 44.77 MSLNMKTLTQALAKTAAVIEKTVQTTVQEVTGPKPLQDYELLDQIGSAGHGLAWKLYSAKPARESTRPQQYPTVCVWVLDKKALSEARVRAGLSKAAEDAFLDLIRADAGRLVRLRHPGVVHVVQALDENKNAMAMVTEPLFASVANVLGNVENVAKVPKDLKDMEMGLLEMKHGLLQVAESLDFLHNNARLIHRSLAPENVLITSNGAWKLAGFGFAISAEQNSADATNIQAFHYTEYDVEDSILPLQPSLNYTAPELVRSKSSSAGCPSDIFSFGCITYHLIARKPLFDCHNNVKMYTNSLTYLSNEAFSRIPPDLVPDLQKMLSANESFRLTAMDFTASPFFRDDTRLRALRFLDHMLERDNMQKSEFLKALSSMWKDFDSRVLRYKVLPPLCAELRNLVMQSMILPMVLTIAESQDKNDFELSTLPALVPVLSTASGDTLLLLVKHAELIINKTSQEQLVAHVLPLIVRAYDDNDARIQEEVLRRSSSLAKQLDLQLVKQAVLPRVHGLALKTTVAAVRVNALLCLGDLVNTLDKHAVLDILQTIQRCTAVDRSAPTLMCTLGVANSILKQHGVEFVTEHVLPLLMPLLTAQQLNVQQFAKYMLFVKDILRKIEEKRGVILTDSGMPEVKSSVASNGSQFQSVLTSIWVLCLLLQRAVRPGTKTGDLLLGELILNKCLQIFLL 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82077392 82086302 + Bma003316.1 Bma01g02446 76963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02446 687 Pfam Protein kinase domain 112 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02446 687 SUPERFAMILY ARM repeat 317 608 IPR016024 -
Bma01g02446 687 SUPERFAMILY Protein kinase-like (PK-like) 34 349 IPR011009 -
Bma01g02446 687 CDD PK_SCY1_like 45 347 - -
Bma01g02446 687 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 647 - -
Bma01g02446 687 ProSiteProfiles Protein kinase domain profile. 39 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02446 687 Gene3D - 349 622 IPR011989 -
Bma01g02446 687 Gene3D Phosphorylase Kinase; domain 1 36 139 - -
Bma01g02446 687 Gene3D Transferase(Phosphotransferase) domain 1 150 348 - -
Bma01g02446 687 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 7 647 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02446 K17541 SCYL2; SCY1-like protein 2 - tcc:18592914 1085.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02446 Bma-Chr1:82077392 Bma14g01179 Bma-Chr14:17483103 9.56E-20 dispersed
Bma01g02446 Bma-Chr1:82077392 Bma11g00993 Bma-Chr11:45126478 1.41E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1693 Blo01g01678 . . . Bpe02g00263 . . Bma01g02446 . . Cma01g00863 Cma09g01302 Car01g00792 . . Cpe06g00982 . . . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 Cone4ag1158 . . . . . . Cme09g00077 . . Bda11g00925 . . . . . . Cmo01g00908 . . . . Car09g01114 . Cpe02g00993 . . . . . . . . . . . . . . Lsi08g00097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006310 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 3 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66305 PF00069 Pkinase 5.00E-25 CL0016 Bma PK