Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02448 ATGGATTCTATGGACGCCATCGAGGAGCTAGCACAGCTCTCTGAGTCTATGCGGCAAGCAACAGCTTTGCTCGCCGACGAAGATGTTGATGAGAATTCCAGTTCTGCTGGTTCCTCCCGTAGGTCTTCCACTTTCCTCAACGTTGTCGCTCTCGGAAATGTTGGAGCTGGTAAATCTGCAGTTTTGAATAGTTTGATTGGACACCCTGTTTTGCCAACTGGTGAAAATGGCGCTACCCGTGCTCCCATAAGCATTGATTTACAGAGGGATGTTTCCTTGAGTAGTAAATCAATTATTTTGCAGATCGACAATAAATCGCAACAAGTTTCTGCAAGTGCCTTACGGCATTCTTTACAGGATAGACTCAGTAAAGGTTCTTCTGGGAAGAGCCGGGATGAAATATATTTAAAGCTCCGCACGAATACAGCACCTCCCCTGAAATTGATTGATTTACCTGGGCTTGATCAACGGATAATAGATGATTCCATGGTCAGTGACTATGCTGAACATAATGATGCCATTTTACTAGTTATAGTACCTGCAGCTCAAGCTCCTGAGATTGCTTCGTCTCGAGCTCTTAAGGTCGCAAAGGAATATGATGCAGAAGGTACAAGAACAATTGGTATAATCAGCAAAATAGATCAGGCTGCTTCAGATCAGAAATCACTTGCTGCAGTCCAGGCTATACTTTTAAATAAAGGGCCATCACGCACATCAGACATCCCATGGGTTGCTTTGATTGGTCAGTCAGTTTCAATTGCTTCTTCACAGTCTGGATCTGTAAACTCTGAAAGTTCCTTAGAAACTGCATGGAGGGCTGAGACAGAGAGTCTCAAATCCATACTAACTGGAGCACCACAAAATAAGTTAGGGAGAATCGCATTGGTGGATGCCCTGGCCCAACAGATACGCAATCGTATGAAAATCCGTGTTCCAAACCTTCTCTCTGGATTGCAAGGGAAGTCTCAAGTAGTTAAAGATGAGTTGGTAAGACTTGGCGAACAAATGGTCCATGGTTCTGAGGGGACTAGGGCTTTAGCTTTGGAACTTTGCCGTGAATTCGAGGATAAGTTTCTCCAGCACATTGCGACGGGTGAGGGGGCTGGTTGGAAAATTGTTGCTAGCTTTGAGGGAAATTTTCCAAATAGAATAAAGCAGCTGCCTCTGGATAGACACTTTGATATGAACAATGTGAAGCGGATTGTGCTAGAAGCTGACGGTTATCAGCCATATCTTATATCACCTGAAAAGGGTTTGAGATCCTTAATAAAAGGTGTTTTGGAGCTTGCTAAAGAACCATCACGTCTTTGTGTTGATGAGGTGCACCGCGTACTGGTAGATATAGTGGCTGCTTCTGCAAATTCTACACCAGGTCTTGGAAGATACCCTCCTTTTAAAAGAGAGGTTGTGGCCATTGCAAGTGCCGCATTAGACAGTTTTAAAACTGAAGCAAAGAAGATGGTGGTTGCCTTAGTTGATATGGAGCGAGCTTTTGTGCCCCCACAACACTTTATCCGATTGGTACAAAGGAGAATGGAGCGACAACGGCGAGAGGAGGAGATTAAAACCCGATCTACAAAAAAAGGCCAGGATACCGAACAGGGGATATCAAAACGAGCAAGTAGTCCACAAACTGATGGTCAACAAACTGGTGGAAGCTTGAAATCAATGAAAGATAAATCTGGAAAGGAAGATAAGGAAGTGCAAGAAAGTTCTGGTTTGAAGACTGCAGGTCCTGAAGGGGAAATAACAGCAGGCTATATATTGAAGAAAAGTGCAAAAACAAATGATTGGAGCCGTCGTTGGTTTGTTTTGAATGAGAAGACTGGAAAGCTTGGTTACACCAAAAAAGAAGAGGAGCGACATTTTCGTGGTGTCATCACCCTAGAGGAATGTTTGATAGAGGAGGGATTAGATGAAGAGGAGCCGCCTCCTTCTTCAAAGAGTTCAAAGGATAAAAAGGCCAATGCTAATGGACCCTCTGGAAAAACACCCAGTCTTGTCTTTAAGATTAGCAGCAAAGTTCCTTATAAAACTGTTTTAAAAGCACACAGTGCTGTTGTCTTGAAGGCTGAGAGCATGACCGATAAGGTTGAATGGATAAATAAGATACGCAATGTGATTCAACCCTCTAAAGGAGGACAAATGAGAGGTGCATCCTCTGAAGTTGGTCTTACCATGCGACAAAGTTTTTCTGACGGTTCTCTGGATACGATGGTCAGAAGACCTGCAGACCCCGAAGAAGAACTCCGATGGATGTCTCAAGAAGTGCGGGGTTATGTTGAAGCAGTTTTGAGCAGTTTGGCTGCTAATGTCCCTAAAGCAGTTGTTCTCTGCCAAGTTGAGAAAGCCAAGGAAGATATGCTTAATCAGTTATACAGCTCAATCAGTGCCCAGAGCACTACAAGGATTGAAGAGCTACTTCAGGAGGACGCAAATGCAAGGCGTAGGAGAGAGAAATTCCAAAAACAGTCTTCTCTCCTCTCTAAATTAACACGTCAACTTAGCCTTCACGACAACCGTGCTGCTGCTGCTGCATCCAACTGGTCTGAAGGCAGTGAAACAGAAAGCAGTCCAAGAACCAGCGCTGGTCCACCTGGCGAAGATTGGAGATCTGCATTTGATGCAGCAGCCAATGGTCCGACAGACTACCAGAGAACCTCATCAAATGGTCACAGTCGACATTACAGCGATCCAGCACAAAATGGTGAGGTTAACTCCGGTGCAAATTCTGGCAGCCGCCGGACTCCAAACAGATTGCCACCGGCTCCACCACAATCCTCATCTGGCTCCAAATATTTTTAG 2805 44.63 MDSMDAIEELAQLSESMRQATALLADEDVDENSSSAGSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDVSLSSKSIILQIDNKSQQVSASALRHSLQDRLSKGSSGKSRDEIYLKLRTNTAPPLKLIDLPGLDQRIIDDSMVSDYAEHNDAILLVIVPAAQAPEIASSRALKVAKEYDAEGTRTIGIISKIDQAASDQKSLAAVQAILLNKGPSRTSDIPWVALIGQSVSIASSQSGSVNSESSLETAWRAETESLKSILTGAPQNKLGRIALVDALAQQIRNRMKIRVPNLLSGLQGKSQVVKDELVRLGEQMVHGSEGTRALALELCREFEDKFLQHIATGEGAGWKIVASFEGNFPNRIKQLPLDRHFDMNNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLVDIVAASANSTPGLGRYPPFKREVVAIASAALDSFKTEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEIKTRSTKKGQDTEQGISKRASSPQTDGQQTGGSLKSMKDKSGKEDKEVQESSGLKTAGPEGEITAGYILKKSAKTNDWSRRWFVLNEKTGKLGYTKKEEERHFRGVITLEECLIEEGLDEEEPPPSSKSSKDKKANANGPSGKTPSLVFKISSKVPYKTVLKAHSAVVLKAESMTDKVEWINKIRNVIQPSKGGQMRGASSEVGLTMRQSFSDGSLDTMVRRPADPEEELRWMSQEVRGYVEAVLSSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTTRIEELLQEDANARRRREKFQKQSSLLSKLTRQLSLHDNRAAAAASNWSEGSETESSPRTSAGPPGEDWRSAFDAAANGPTDYQRTSSNGHSRHYSDPAQNGEVNSGANSGSRRTPNRLPPAPPQSSSGSKYF 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82100252 82111785 - Bma003318.1 Bma01g02448 76965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02448 934 Gene3D Dynamin, middle domain 340 542 - -
Bma01g02448 934 SMART dynamin_3 14 244 IPR001401 GO:0003924|GO:0005525
Bma01g02448 934 Pfam Dynamin GTPase effector domain 748 830 IPR003130 GO:0003924|GO:0005525
Bma01g02448 934 MobiDBLite consensus disorder prediction 510 580 - -
Bma01g02448 934 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 42 312 IPR030381 GO:0005525
Bma01g02448 934 SMART PH_update 582 711 IPR001849 -
Bma01g02448 934 Coils Coil 804 824 - -
Bma01g02448 934 MobiDBLite consensus disorder prediction 635 665 - -
Bma01g02448 934 Gene3D - 569 712 IPR011993 -
Bma01g02448 934 SMART GED_2 745 838 IPR003130 GO:0003924|GO:0005525
Bma01g02448 934 ProSiteProfiles GED domain profile. 750 843 IPR020850 -
Bma01g02448 934 Gene3D - 42 328 IPR027417 -
Bma01g02448 934 MobiDBLite consensus disorder prediction 535 556 - -
Bma01g02448 934 MobiDBLite consensus disorder prediction 881 917 - -
Bma01g02448 934 Pfam PH domain 586 708 IPR001849 -
Bma01g02448 934 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 71 80 IPR019762 -
Bma01g02448 934 ProSiteProfiles PH domain profile. 581 709 IPR001849 -
Bma01g02448 934 MobiDBLite consensus disorder prediction 842 862 - -
Bma01g02448 934 MobiDBLite consensus disorder prediction 650 665 - -
Bma01g02448 934 MobiDBLite consensus disorder prediction 557 571 - -
Bma01g02448 934 MobiDBLite consensus disorder prediction 510 534 - -
Bma01g02448 934 SUPERFAMILY PH domain-like 582 709 - -
Bma01g02448 934 PRINTS Dynamin signature 70 87 IPR022812 -
Bma01g02448 934 PRINTS Dynamin signature 182 200 IPR022812 -
Bma01g02448 934 PRINTS Dynamin signature 201 217 IPR022812 -
Bma01g02448 934 PRINTS Dynamin signature 45 63 IPR022812 -
Bma01g02448 934 MobiDBLite consensus disorder prediction 842 934 - -
Bma01g02448 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 321 IPR027417 -
Bma01g02448 934 CDD DLP_1 48 312 IPR001401 GO:0003924|GO:0005525
Bma01g02448 934 PANTHER DYNAMIN-2A 5 862 - -
Bma01g02448 934 PANTHER DYNAMIN 5 862 IPR022812 -
Bma01g02448 934 Pfam Dynamin family 48 212 IPR045063 -
Bma01g02448 934 Pfam Dynamin central region 261 503 IPR000375 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02448 K01528 DNM1_3; dynamin 1/3 [EC:3.6.5.5] - csv:101220753 1498.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02448 Bma04g00337 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02448 Bma-Chr1:82100252 Bma06g01258 Bma-Chr6:49703305 2.78E-07 dispersed
Bma01g02448 Bma-Chr1:82100252 Bma04g00337 Bma-Chr4:2746541 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69