Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02450 ATGGCGAAGGCGGCTTTGACTCCTTGGTTTCACAAGAAGATCGTCGATCCTCTCATCCAGATCCTCCAGAGGGGTTCTGATCCACATTCTTTAGCACTCTCCGCTGCTCTGGGCACTACTTTCGGATTGTTTCCAATATGTGGGGTCCCCGTCTTTTTGTGTGGGTTTGCTATTGCGTTGCTTGGATCTCTTTGCCATGCTCCCACAGTGATGCTGTCAAACTTTATTTCAACTCCAATTGAACTGAGTTTGGTGGTACCTTTCTTGCGCTTTGGTGAAGCTATTTCTGGGGGATCGCATTTTCCATTAACAGATGCACTGAAGAAGGTTTTGACTGGCCAAGCGTCACAAGAAGTGCTCTTGAGTATCTCCCATGCATTGCTGGGATGGCTCGTGGCTTCACCCTTTATTTTTGCCGCGCTGTATGTGCTATTTTTACCAATTTTCAAGATCTTGCTTCTGAAGTTTGGCGATGCTTCTTCAATCCCATTGAAGTCACCCAGGGATGTCTGA 513 46.98 MAKAALTPWFHKKIVDPLIQILQRGSDPHSLALSAALGTTFGLFPICGVPVFLCGFAIALLGSLCHAPTVMLSNFISTPIELSLVVPFLRFGEAISGGSHFPLTDALKKVLTGQASQEVLLSISHALLGWLVASPFIFAALYVLFLPIFKILLLKFGDASSIPLKSPRDV 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82114475 82117776 - Bma003320.1 Bma01g02450 76967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02450 170 Pfam Uncharacterized protein conserved in bacteria (DUF2062) 18 151 IPR018639 -
Bma01g02450 170 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 3 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02450 - - - twl:120007125 243.047
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02450 Bma04g00340 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02450 Bma-Chr1:82114475 Bma04g00340 Bma-Chr4:2763620 3.12E-97 dispersed
Bma01g02449 Bma-Chr1:82112427 Bma01g02450 Bma-Chr1:82114475 2.51E-96 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1741 Blo01g01683 . . . Bpe02g00258 Bpe04g00324 Bma04g00340 Bma01g02450 . . . . . . Sed11g2309 . . Bhi04g02541 Tan11g0052 Cmetu03g0350 . Hepe02g3462 . Lcy10g2354 . . . . . . . . . . . . . . . . . Bda11g00920 . . . . . . . . . . . . . . . . . . . . . Cla11g00792 Cam11g0826 Cec11g0809 Cco11g0813 Clacu11g1032 Cmu11g0893 Cre11g1270 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005772 2 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 39