Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02455 ATGACTCCATCTAATTTGGCGGCGCAGTTTGGCGATACGACTTACACCAAGGTTTTTGTTGGGGGGTTGGCATGGGAAACCCAGAATGAGACGATGAAGAAGTACATTGAACAGTTTGGTGACATCTTGGAGGCCGTTGTTATTACTGATAAACCCACCGGAAGATCCAAGGGCTATGGATTTGTAACGTTCCGAGACCCGGAAGCCGCCATGAGAGCTTGTGTGGATGCTGCTCCTGTGATAGACGGAAGGAGGGCCAACTGCAATCTGGCTTCTTTGGGTGTTCAGAGATCCAAGCCTTCAACGCCAAAACACGGTGGAGGAGGCAGGAGCTTTAGGGTAATGGGCTCTTTTCAGACAGGGTTTGGAGGGAGGGCTGGAGCAGCTTTTCCTTCACCTGCAACCTTCCCTCATTATGCCTCTCAACAAGGGATACCTTATAATCTTTATGGGTATGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCTATTACAATGTCTATGGAGGTGCAACCACTCCATATCCAGTGTACGGGGCAGGGGTCGGTGGGATGATGACAACCGGAGCAGCAGCGGCCGCCGCTGCCTTTTACCCTTTTCTTCAGTTTGGAGAGGGAAGTGGTGGGGCTAATGGCTACTCTTCTGGTCAAGGCTATGGCTTCCAATATCCTCACCATCTCTTTCAATATTCACCTATTACTTCAAATGCTACCACTTACCCTCATCACTATGCTCCACCCATGTCTCTCGCTCCTACTCCTGCTTTGCCATCAGGTCTCTTCCCTTTCTTCTCCTACTTTACAATCTTGAAGTGA 816 49.75 MTPSNLAAQFGDTTYTKVFVGGLAWETQNETMKKYIEQFGDILEAVVITDKPTGRSKGYGFVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRSFRVMGSFQTGFGGRAGAAFPSPATFPHYASQQGIPYNLYGYGSLSLSLSLSSYYNVYGGATTPYPVYGAGVGGMMTTGAAAAAAAFYPFLQFGEGSGGANGYSSGQGYGFQYPHHLFQYSPITSNATTYPHHYAPPMSLAPTPALPSGLFPFFSYFTILK 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82148250 82150790 - Bma003325.1 Bma01g02455 76972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02455 271 Gene3D - 2 112 IPR012677 -
Bma01g02455 271 SMART rrm1_1 17 89 IPR000504 GO:0003723
Bma01g02455 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Bma01g02455 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Bma01g02455 271 PANTHER OS01G0876800 PROTEIN 1 258 - -
Bma01g02455 271 CDD RRM_RBM24_RBM38_like 16 91 - -
Bma01g02455 271 PANTHER BOULE-RELATED 1 258 IPR037366 GO:0003729
Bma01g02455 271 SUPERFAMILY RNA-binding domain, RBD 8 111 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02455 - - - tcc:18592766 381.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02455 Bma-Chr1:82148250 Bma14g00244 Bma-Chr14:2929911 6.34E-09 dispersed
Bma01g00691 Bma-Chr1:6340650 Bma01g02455 Bma-Chr1:82148250 1.11E-46 transposed
Bma03g00325 Bma-Chr3:2439830 Bma01g02455 Bma-Chr1:82148250 7.86E-46 transposed
Bma03g01233 Bma-Chr3:20214117 Bma01g02455 Bma-Chr1:82148250 1.54E-49 transposed
Bma04g00928 Bma-Chr4:13021202 Bma01g02455 Bma-Chr1:82148250 2.34E-50 transposed
Bma05g00015 Bma-Chr5:1797048 Bma01g02455 Bma-Chr1:82148250 4.10E-47 transposed
Bma01g02455 Bma-Chr1:82148250 Bma04g00341 Bma-Chr4:2765923 7.80E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1758 Blo01g01688 Blo12g00810 . . Bpe02g00254 Bpe04g00327 . Bma01g02455 . . . . . . . Cpe06g00946 . . . . . . . . Cla08g00181 . Cec08g0069 Cco08g0251 . Cmu08g0171 Cre08g0160 . . . . . . . . . . Bda11g00916 . . . . . Sed08g1872 . Cmo09g01205 . . . Car09g01075 . Cpe02g00981 Bhi06g00110 Tan10g1835 Cmetu11g0599 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005770 1 3 1 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39