Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02458 ATGCGGAATCCTGCTTCACACGATCTCGTTCGATCTATTAAAAGCTTCATTGTATCTTTTTCGTTTCACGCGGCGGATCCCGATAATGATTGCAAGAGGGTTCAAGATTTCTTCTCTACTATGGAAGATGCAATCAGGGATCATCCTCTATGGGCTGGTGCCACAGATGAGGAAGTTGATTCTTCCATGGAGGGTTTGGAAAAATATGTCATGACAAAATTGTTCACACGTACATATGCTTCTTTGGAGGATAGGAAGATTGATAAGGTAGTGACGGAGAAGATAAGCTTGTTGCAACACTTCTTGAAGCCTGAGCACTTGGATATTCCCGCAGTTCTTTGTAATGAAGCTTCTTGGCTGCTCGCAGAGAAAGAGTTGCAGAAAATCAATGCTTTTAAAGCTCCTCGTGATAAGCTTTTGTGTATAATGAATTGTTGCAAAGTCATCAACAATTTGTTCCTGAATGTATCAATGGCAGAAAATCATGTGCTAGGAGGGGCAGATGACTTTCTTCCTGTTCTCATATATGTTGCCAATCCTCCACAGTTGCATTCCAATTTGAGGTTTATACAGTTATATCGGAGGCAGGCTAAACTTGTGTCTGAAGCTGCTTATTGTTTTACGAATCTTTCCTCAGCTAAAATATTTATCCTTGACTTAAATTCAAAATCTCTTTCTATGGATGAAATGGAATTTGAGGAACGAATGGAAGCAGCTAGACAAAATCAGAGAGTGACAGAGATGATGCCTACAACTCTGCCGAATGGGATCTTGACCTCTAATTTTCAAGCAGGCCCCATCCCTTCAGTTATGCATAAAGAGATCACTAATGAGATTAATAAAGGGGCCTCAAGTCATCCTTATATGGATATGGAGGCTGGTGAGTTAACTGTTGGGGATGTGAAGATTCTTTTAAGCTTGTATAAAGATGTCGTTACAAAGTACAGACTGCTACTTGATGTTGTTAAGGATCATCAAGTGTCCTCATCAGAATCCCCCAACGCCAATCCATCTCCGAATTTAAGCAGGAGAAATAGTTTTCTTTTAACAAAGCCTGAAGAAACGAGTCATGGCAGTCCTTCAGAACACAAGTAG 1095 40.46 MRNPASHDLVRSIKSFIVSFSFHAADPDNDCKRVQDFFSTMEDAIRDHPLWAGATDEEVDSSMEGLEKYVMTKLFTRTYASLEDRKIDKVVTEKISLLQHFLKPEHLDIPAVLCNEASWLLAEKELQKINAFKAPRDKLLCIMNCCKVINNLFLNVSMAENHVLGGADDFLPVLIYVANPPQLHSNLRFIQLYRRQAKLVSEAAYCFTNLSSAKIFILDLNSKSLSMDEMEFEERMEAARQNQRVTEMMPTTLPNGILTSNFQAGPIPSVMHKEITNEINKGASSHPYMDMEAGELTVGDVKILLSLYKDVVTKYRLLLDVVKDHQVSSSESPNANPSPNLSRRNSFLLTKPEETSHGSPSEHK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82172443 82177125 - Bma003328.1 Bma01g02458 76975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02458 364 SMART vps9_2 118 235 IPR003123 -
Bma01g02458 364 SUPERFAMILY VPS9 domain 3 237 IPR037191 -
Bma01g02458 364 Pfam Domain of unknown function (DUF5601) 11 75 IPR041545 -
Bma01g02458 364 Pfam Vacuolar sorting protein 9 (VPS9) domain 121 220 IPR003123 -
Bma01g02458 364 PANTHER OS03G0842700 PROTEIN 1 321 - -
Bma01g02458 364 Gene3D VPS9 domain 82 244 IPR037191 -
Bma01g02458 364 MobiDBLite consensus disorder prediction 325 355 - -
Bma01g02458 364 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 321 IPR045046 GO:0005085|GO:0016192
Bma01g02458 364 MobiDBLite consensus disorder prediction 325 364 - -
Bma01g02458 364 ProSiteProfiles VPS9 domain profile. 85 226 IPR003123 -
Bma01g02458 364 Gene3D - 1 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02458 K20131 RABGEF1; Rab5 GDP/GTP exchange factor - qsu:112016318 432.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02458 Bma-Chr1:82172443 Bma01g02469 Bma-Chr1:82361616 2.52E-109 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1770 Blo01g01693 . . . Bpe02g00249 . . Bma01g02458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00913 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017228 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6