Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02490 TTACTTCTTTTTGAAAAGCCATATGACAGCATGGTGGAAGCTGAAAGAATTGAAAATCTTGAATTTAAATGGGGTAAAAGGAGAGGAATTGGCGGGAAAAATAAAGACATAATGTTTTACGAATCTTTTACATATGACGGTGTTGACTATACACTTTATGACTCTGTTTATCTTTACAAGGATGGAGAATCTGAACCATTTGTTGGGAAACTAGTAAGAATCTGGGAGAATCCTAACAAGTCAAAAAAAGTGAAGATATTATGGTTTTTCCGTCCTCAGGAGATTGTCAATTTTCTTGGTTCTGAGTACACACGTCATAATGAATTGTTTTTGGCATCAGGCGAGGGGATTGGTCTTGCAAATACTAATCCTTTGGAAGCAATTTGTGGAAAATGTAATGTTGTCTGCATTTCAAAAGACAGCAGAAATACACAACCTTCAGTCGAAGAGGTCCAAATGGCTGACTTTCTTTTTTATCGCACCTTTGATGTTGGTCGCCGGAAGATTCTTGGGAAGATAAGTGAGAAAATTGCTGGTATAGAAGGTTGGTATCTTTTAGGAGAAGTAGATAATTTTCCAAATGGTGATTCCAAAGCATCATTGGCTAAACATATTTCTTCCATTGGTAAGAATTATGGTCCTGGTGATGGTGTGGAAAAAGATCGAGTGAATAAAAGTCAGTATACTAATGCCAAAAATCATTTAAGAGCTGTTAATTCTGCAGAGAGAGTAAAATGTAGCAATGATAATGGTGAATTTGACCAAGGGCCATCGAAACTGTACCAAAGGCCTCCAAAGAAAGCCAGGACTGATAGTTCTGTTCAATTGTCTATTGACAAGAATAAAAATAGTGTACAGAAGTTATACAATGATTTCAGGATAAACATGAATAACTCTGTAGACGTAAGTGATTCTCATCGAGCAGACAAAATCCCTGGAAGGAAGCTGCGACCAGATGAGAAGCTAACAAAACTTTCTAACGTAAAGATGCCTGAAACATTGTTACTGGCTAATTTTAATAAGGACAACAAAGTTGATAGTGGAGACGTGGAAGTTACTAGAAGACCTGGTCCTGATAGAAGCAGATGGTTTAAAGGACTTCCTTGGGAAGAGAGACTGAAAACTGCTAGTGATCAGGGAACACTAGTTCTATTTCAGAATTTAGATCCATATTTTACTTCAGGAGAAGTAGAGGATATTGTTTGGCATGCTTTCAGTGAAAGTTGCACTGCAAAAATGATTCAGAAGACTGCATTTTCGTCCCCTTATTCTGGTCAAGCTTATGTCATTTTTAAAACAAGGGAAGCTGCGGAGAAGGCTGTTACAAAATTAGATGAAGGCTGCTTACTTCTTTCAAGTGGAAGGCCTCTTGTTGGCAGCATTGCAACTCCATACTTCCGAACAACGAAACCAGCATTTTTTGGTCACATCGTTCTTGATAAACAAAGATTTCATATGCAACGGGAGATGAAAGATGCTGTATCTACTTCGCATTGCGCTCAACCTAACACCATTGAATATGACATGGCATTGGAGTGGTGTTTATTACAAGAAAAATCAGACCGAGCATGGGAAAAGTTACACAAGGTAGGAAAAGTTTGCTTTGGATATTCTACAAATATAAATAACCTACATATACAATCTAATGTGGACTTTTTCAATCCGCCTCATTGCTTTTCATTTTTTATTTTCTAA 1695 37.29 LLLFEKPYDSMVEAERIENLEFKWGKRRGIGGKNKDIMFYESFTYDGVDYTLYDSVYLYKDGESEPFVGKLVRIWENPNKSKKVKILWFFRPQEIVNFLGSEYTRHNELFLASGEGIGLANTNPLEAICGKCNVVCISKDSRNTQPSVEEVQMADFLFYRTFDVGRRKILGKISEKIAGIEGWYLLGEVDNFPNGDSKASLAKHISSIGKNYGPGDGVEKDRVNKSQYTNAKNHLRAVNSAERVKCSNDNGEFDQGPSKLYQRPPKKARTDSSVQLSIDKNKNSVQKLYNDFRINMNNSVDVSDSHRADKIPGRKLRPDEKLTKLSNVKMPETLLLANFNKDNKVDSGDVEVTRRPGPDRSRWFKGLPWEERLKTASDQGTLVLFQNLDPYFTSGEVEDIVWHAFSESCTAKMIQKTAFSSPYSGQAYVIFKTREAAEKAVTKLDEGCLLLSSGRPLVGSIATPYFRTTKPAFFGHIVLDKQRFHMQREMKDAVSTSHCAQPNTIEYDMALEWCLLQEKSDRAWEKLHKVGKVCFGYSTNINNLHIQSNVDFFNPPHCFSFFIF 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82639312 82646269 + Bma003368.3 Bma01g02490 77007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02490 564 Gene3D - 369 468 IPR012677 -
Bma01g02490 564 SMART BAH_4 48 174 IPR001025 GO:0003682
Bma01g02490 564 Pfam BAH domain 50 149 IPR001025 GO:0003682
Bma01g02490 564 PANTHER PROTEIN ANTI-SILENCING 1 11 530 - -
Bma01g02490 564 SUPERFAMILY RNA-binding domain, RBD 374 464 IPR035979 GO:0003676
Bma01g02490 564 CDD RRM_SF 383 445 - -
Bma01g02490 564 Gene3D - 14 172 IPR043151 -
Bma01g02490 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 381 464 IPR000504 GO:0003723
Bma01g02490 564 MobiDBLite consensus disorder prediction 246 274 - -
Bma01g02490 564 ProSiteProfiles BAH domain profile. 48 173 IPR001025 GO:0003682
Bma01g02490 564 PANTHER PROTEIN ANTI-SILENCING 1 11 530 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02490 - - - mcha:111007160 558.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02490 Bma-Chr1:82639312 Bma08g00018 Bma-Chr8:380622 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g361 Blo01g01711 . . . . Bpe02g00232 . Bma01g02490 . . Cma01g01593 . Car09g00478 . . . Cpe06g00414 . . . . . . . . . . . . . . Cone4ag1541 . . . Lsi04g02217 . . . . . . . . . . . Sed05g1617 Cmo01g01641 Cmo09g00537 . . Car01g01212 . . Cpe02g00384 Bhi09g02408 Tan01g3769 Cmetu04g2116 . Hepe01g2111 Mch11g0649 . . . . . . . . . . . Cme04g00306
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004249 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 43