Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g02496 | ATGACGACTGATTCCAATTTGGAAATTACTTTGACATTTTTCCGGACAGTCGGAGATGTTTTCTACTTGTTGCATATTGTTTTTAAGTTTCGAACCGCCTATGTATCCCCGAGTTCGCGAGTTTTTGGCCGGGGCGAACTTGTGATGGATCCAAAAAAGATTGCTGGACGCTACTTGAGATCAGACTTCTTCATAGATCTGATAGCAACTCTACCCCTTCCTCAGATTGTAATTTGGTTTGTTATGCGGCAAGCTGATCATACAGACAATACCCTTGTACTGATTGTTTTGCTCCAATATGTTCCTAAATTGTATTTGATTTTCCCGTTAAGCGTTCTAGGAGCATCATGGTATCTATTGTCGTTAGAGCGGCACGCCTCTTGCTTGAAATCCGTATGCAGAAAGGAAATGGGTTCTAATTCAATGTGCTCTCTTGATTACCTGCTGTGTAGTAATTTGAATCTGGACAGTAGAAGGAGGTGGGAAGCAAATACTACTGTATTTAGCTACTGTAATCCAACTGAGGCTACAAGTTTCAACTATGGATTATTTGCAGATGCAATTGCAAAGAATGTCATCTACTCGAGTTTTTTCGAGAAGTATTTTTTCTGTCTTTGGTGGGGCCTGCAGAACTTGAGTTCTTATGGCCAGGGCCTGACTGCTAGTACATTTGTTGGAGAGACTGTTTTTGCTAGCTTCATTGCCATTGTGGGTCTGGTTTTGTTTGCCCATTTGATTGGAAATATGCAGACTTATTTGCAATCTATCTCGGTAAGGCTGGAGGAGTGGAGGCTCAAGCGAAGGGACACCGAGGAGTGGATGAAGCACCGCCAACTCCCTCGAGATCTACAAGAGCGTGTTCGTCGGTTTGTACTGTATAAATGGGTTGCAACCCGAGGTGTTGATGAAGAGTCAATCCTACGAGCCCTTCCTACGGACCTTCGCCGAGATATTCAACGCCACCTTTGCCTAGACTTGATTCGACGTGTCCCTTTTTTTGCACAAATGGACGATCAATTACTTGATGCAATATGCGAACGGTTAGTTTCGTCTTTAAGTACACAAGGCACTTACATCGTTCGTGAAGGTGACCTGGTGACCGAGATGCTCTTCATTATTCGAGGGAGGCTCGAGAGTTCTACAACAAACGGTGGTCGAAGTGGTTTCTTCAATTCAATAACATTAAGACCAGGAGATTTTTGTGGGGAAGAACTACTTTCGTGGGCATTGCTTCCAACATCATCAGCGAGCTTGCCTTGTTCGACCCGAACGGTTAAAACTCTCGTTGAAGTCGAAGCCTTCGCTCTCTATGCCGAAGATCTCAAATTCGTCGCTAATCAGTTTAAACGCCTCCATAGCAAGAAGCTTCAACACACGTTCCGATTCTACTCGCACCATTGGAGAACTTGGGCTTCCTGTTATATTCAATCTGCATGGCATCGACACCAAAAGCGGAAGATGGCAAAAACGCTTAGCGCTAAGGAATCATTCTACTTCACTCTGAAGAAGCCATCGATGGAAGGAACTGAACAAGAAGAGGGCGAGCCTCATTCTATGCATTCAAACAACTCGAACGTGAAACAGAACCTCGGAGTTACGATACTGGCTACCAGTGGCCTCACGGGTCTTGGTGATGGCCCTAAGCCTTTTTCGGTCATTCCATCCCGCTTAAAATATAATTTTCTTGATTCAGGGGTGTCTTTAAATGTTACTAGTCAAGGATCTTTGAACAATAAAATTGATTTTAGCTTTCTGAATTATGGATTTTTTGCAAAGAGGTTTCTCTCCCATGATACTGGGGTTGGAAACAAAATTAGCACCAAGAACTTAAATAATGCGAGAAGTGGATCATATAAAGGACTTACAAAAAATTGGAAGAAGGCAAAGGCAGTTACTGCTTTCAGTCATAAGAGCTCTTCTTCGTCCAACACCTTGGCCTCCTCAGAAGTTGATGCAAGGATGTCAGGTAAACTTCTAGGTGGACCTGTGGAGGAGAATTCTGAAATGGTATTATCTAGCTCTATCAAAGGTTCTAAAGTGAATAAGAAAAAAAAGTCAAGGACAAAAAAAAGCAAGGAAGAAAAATCTTCCATAGACGTAGCAGCTGAAGTTGATGCTTTAAAAAGTTCCAGGGATGTTGAAGACGGAAACTCCATTATAAGGAACCATGGTCATAATAAAGAATCCACGACAAAGGTAACTATGGAAAAGGTTACTGGCCATGCATCAACAAAACCTCAATCAAATAAGAAAAGAGCAAATTCTGGCTCTGAAGGCAAATCTGTAGAAGCTGCTAATGTGACCTCACAGAAACAAGCACAAGGAGCAAAAGGAAGGTTGAAACCTGAGGGACAGAAGACGATGATGAAGCAGCTATATCCTCCTACTGGAAAATCCGTTGTGGTGGTGGAGTCGGTTACAAAAGCAAATGTTATTCAAAAATATCTTGGTGGTATGTATGAAGTCTTGCCTAGCCATGGTCACGTAAGGGATTTGGCTGCAAGGTCAGGATCGGTGCGGCCTGATGACGATTTTAGTATGGTTTGGGAGGTTCCGGCAACTGCCTGGACCCATCTCAAGAGCATTAAGGTTTCATTGAGTGGAGCTGAAAATCTAATTCTTGCCTCTGATCCTGATCGTGAAGGAGAGGCCATTGCTTGGCACATTATTGAGATGCTGCAGCAACAAGATGCTTTGCATGAAGGGGTTAATGTATCCAGGGTTGTTTTTCATGAAATAACTGAGACATCTATCAAGAATGCTTTGCTATCTCCAAGAGAAATTGACGTCAATTTGGTTCACGCTTACCTTGCCCGTCGGGCATTAGATTATTTGATTGGATTTAACATTTCTCCATTGCTGTGGAGAAAACTACCAGGTTGCCCATCAGCTGGTCGTGTCCAATCTGCTGCACTTTCTCTTATATGTGATAGAGAAACAGAAATTGATGAATTTCGACCACAAGAGTATTGGACAATTATGGTCAAGTTGAATGAGATTATTTCTGGTTCTGCTGTACATGGGTTATCTGTCTCTGCACACTTGACCCATTTTAATCATGCAAAGTTGAATCAGTTTTCCATCAGTTCTTCTGTGGAGGCAAAGAATATTGAACATAAAATTCACTCGGAAAATTTTCAGGTTGTTAGTTCTAAAAAGAGCAAGATGCGTAAAAATCCTCCCATGCCATTTATAACATCAACACTTCAGCAGGATGCAGCTAATAAGTTGCATTTTTCTGCATCATATACAATGAGGTTTTTAATGCAGCTTGCTCAGAAACTTTACGAAGGGATCCAGTTGCCTGATGGTAGTGCTGTGGGTTTGATAACTTATACCAGAACAGATGGATTGCACATTTCTGATGAAGCTGTCAGGGACATTCGATCCATGGTTACTCAAAGGTATGGGCCTAATTTTGCTGTGGAGGGTCCTCACAAATACTTTAAGAAGGTCAAGAATGCTCAAGAGGCCCATGAAGCAATTAGACCCACTGATATAAGGAGGATACCATCAATGCTTGTTGAGGTTCTTGATGAAGACTCCCACAAATTATATTCTCTTATTTGGTCTCGGACAATGGCATGCCAAATGGAACCTTGCACCATTGAACAGATACAAGTCGATAGTGGAAGTGCTGGTGGTTCTATAATTTTCAGATCTGCATCCTCAAGAGTTCAGTTTCTTGGATATCAGGCAGTTTTTGAGGATTCAGAAGCCAAAGTTATAGGAAATAAAGAAAATGAAGTGAAAGGACGTGAAGAAGCTTTTGAAGTTCTAAGTTCATTGAAGGTGGGTGATCAAATGAATCTTAGTGAAATGGAGCTCAATCAACACTTTAGTCAGCCTCCTTCACGCTACTCTGAGGGAACCCTGGTTAAGAAGCTGGAGGAGCTAGGAATTGGAAGACCTTCGACTTATGCTATTACTTTAAAAGTATTACAGGACAGAAACTATGTGACAGTGAAAAACCGAGTACTCTATCCAGAATTTCGTGGGCGGATGGTGTCTGCATTTCTTGGTCACCTTTTTTCAGAGGTTACGGATTATAGTTTCACTGCTGATATGGAGACTGAGCTCGATAATGTATCTGCCGGTTTAACTGAGTGGAAAGGCCTCCTCAAAGATTATTGGACTCGGTTCAGCTCTTACTGTGATCATGCTAGTGGTGTTCATATTCATCAGGTGGAAAAGATGTTGGAAAAAAAATTTGGAGACTTTTTGTTTTCTTTTCTTTCCGATAAATGTAGGACGTGCCCCAGTTGTATGGAGGGCACTTTAATTTTCAAAGTAAGTCGATTTGGAGCAGGTTATTTCATAGGTTGTGACCAACATCCAAGGTGCAAGCACATTGCTAAGACATTATATGGTAATGATGATGAAGAAGGTACACCTCAAACTAACAGCGTAGAAGAACCTAAACTACTAGGTCTTCATCCAGGTTCCAATGAAAAGATTCTTTTAAAGAGTGGCCCTTACGGATCTTACGTACAGCTTGGTGAAGACAGAAAAGGATACTTGCCTAAAAGAGCATCCCTTTCCCATATAAAGGATGTTGACTCTGTTAAGCTCGAAGATGCCATCGAGTTACTACGTTATCCGGTGACTCTGGGCAACCATCCGAAGGATGGACAGCCAGTCTTAGTGAAGGTTGCGAAGTTTGGGTTTTCGATCAGACATAGACGGACGATGGCTCCTGTTCCTAAGAATCTGAAGCCTAATGAGATTAGCTTAGAGAAAGCCTTGGAACTTCTGTCGGGTAAAGACGTGAAACGAAGTGGCCGACCCAAGAAGAAGCGGGAGGAAGAATCCATTGAAGCCTTGTAG | 4827 | 42.2 | MTTDSNLEITLTFFRTVGDVFYLLHIVFKFRTAYVSPSSRVFGRGELVMDPKKIAGRYLRSDFFIDLIATLPLPQIVIWFVMRQADHTDNTLVLIVLLQYVPKLYLIFPLSVLGASWYLLSLERHASCLKSVCRKEMGSNSMCSLDYLLCSNLNLDSRRRWEANTTVFSYCNPTEATSFNYGLFADAIAKNVIYSSFFEKYFFCLWWGLQNLSSYGQGLTASTFVGETVFASFIAIVGLVLFAHLIGNMQTYLQSISVRLEEWRLKRRDTEEWMKHRQLPRDLQERVRRFVLYKWVATRGVDEESILRALPTDLRRDIQRHLCLDLIRRVPFFAQMDDQLLDAICERLVSSLSTQGTYIVREGDLVTEMLFIIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALLPTSSASLPCSTRTVKTLVEVEAFALYAEDLKFVANQFKRLHSKKLQHTFRFYSHHWRTWASCYIQSAWHRHQKRKMAKTLSAKESFYFTLKKPSMEGTEQEEGEPHSMHSNNSNVKQNLGVTILATSGLTGLGDGPKPFSVIPSRLKYNFLDSGVSLNVTSQGSLNNKIDFSFLNYGFFAKRFLSHDTGVGNKISTKNLNNARSGSYKGLTKNWKKAKAVTAFSHKSSSSSNTLASSEVDARMSGKLLGGPVEENSEMVLSSSIKGSKVNKKKKSRTKKSKEEKSSIDVAAEVDALKSSRDVEDGNSIIRNHGHNKESTTKVTMEKVTGHASTKPQSNKKRANSGSEGKSVEAANVTSQKQAQGAKGRLKPEGQKTMMKQLYPPTGKSVVVVESVTKANVIQKYLGGMYEVLPSHGHVRDLAARSGSVRPDDDFSMVWEVPATAWTHLKSIKVSLSGAENLILASDPDREGEAIAWHIIEMLQQQDALHEGVNVSRVVFHEITETSIKNALLSPREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCPSAGRVQSAALSLICDRETEIDEFRPQEYWTIMVKLNEIISGSAVHGLSVSAHLTHFNHAKLNQFSISSSVEAKNIEHKIHSENFQVVSSKKSKMRKNPPMPFITSTLQQDAANKLHFSASYTMRFLMQLAQKLYEGIQLPDGSAVGLITYTRTDGLHISDEAVRDIRSMVTQRYGPNFAVEGPHKYFKKVKNAQEAHEAIRPTDIRRIPSMLVEVLDEDSHKLYSLIWSRTMACQMEPCTIEQIQVDSGSAGGSIIFRSASSRVQFLGYQAVFEDSEAKVIGNKENEVKGREEAFEVLSSLKVGDQMNLSEMELNQHFSQPPSRYSEGTLVKKLEELGIGRPSTYAITLKVLQDRNYVTVKNRVLYPEFRGRMVSAFLGHLFSEVTDYSFTADMETELDNVSAGLTEWKGLLKDYWTRFSSYCDHASGVHIHQVEKMLEKKFGDFLFSFLSDKCRTCPSCMEGTLIFKVSRFGAGYFIGCDQHPRCKHIAKTLYGNDDEEGTPQTNSVEEPKLLGLHPGSNEKILLKSGPYGSYVQLGEDRKGYLPKRASLSHIKDVDSVKLEDAIELLRYPVTLGNHPKDGQPVLVKVAKFGFSIRHRRTMAPVPKNLKPNEISLEKALELLSGKDVKRSGRPKKKREEESIEAL | 1608 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 82671441 | 82692937 | - | Bma003374.1 | Bma01g02496 | 77013 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g02496 | 1608 | SUPERFAMILY | cAMP-binding domain-like | 262 | 454 | IPR018490 | - | |
Bma01g02496 | 1608 | SMART | toprim5 | 798 | 898 | IPR006171 | - | |
Bma01g02496 | 1608 | Pfam | Ion transport protein | 9 | 259 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Bma01g02496 | 1608 | ProSitePatterns | Prokaryotic DNA topoisomerase I active site. | 1093 | 1116 | IPR023406 | GO:0003917 | |
Bma01g02496 | 1608 | Gene3D | Topoisomerase I, domain 2 | 938 | 1378 | IPR013824 | - | |
Bma01g02496 | 1608 | SMART | cnmp_10 | 332 | 463 | IPR000595 | - | |
Bma01g02496 | 1608 | TIGRFAM | topA_bact: DNA topoisomerase I | 801 | 1451 | IPR005733 | GO:0003677|GO:0003917|GO:0006265 | |
Bma01g02496 | 1608 | Gene3D | - | 1 | 258 | - | - | |
Bma01g02496 | 1608 | PANTHER | DNA TOPOISOMERASE, TYPE IA, CORE | 726 | 1599 | IPR000380 | GO:0003677|GO:0003917|GO:0006265 | |
Bma01g02496 | 1608 | MobiDBLite | consensus disorder prediction | 709 | 734 | - | - | |
Bma01g02496 | 1608 | CDD | TOPRIM_TopoIA_TopoI | 798 | 925 | IPR034149 | - | |
Bma01g02496 | 1608 | SMART | topIaneu2 | 1052 | 1337 | IPR003602 | GO:0003677|GO:0003916|GO:0006265 | |
Bma01g02496 | 1608 | Gene3D | - | 795 | 934 | - | - | |
Bma01g02496 | 1608 | CDD | TOP1Ac | 931 | 1384 | IPR013497 | GO:0003677|GO:0003916|GO:0006265 | |
Bma01g02496 | 1608 | MobiDBLite | consensus disorder prediction | 735 | 775 | - | - | |
Bma01g02496 | 1608 | Gene3D | Helix hairpin bin | 260 | 323 | - | - | |
Bma01g02496 | 1608 | PRINTS | Prokaryotic DNA topoisomerase I signature | 962 | 980 | IPR013497 | GO:0003677|GO:0003916|GO:0006265 | |
Bma01g02496 | 1608 | PRINTS | Prokaryotic DNA topoisomerase I signature | 872 | 885 | IPR013497 | GO:0003677|GO:0003916|GO:0006265 | |
Bma01g02496 | 1608 | PRINTS | Prokaryotic DNA topoisomerase I signature | 1300 | 1314 | IPR013497 | GO:0003677|GO:0003916|GO:0006265 | |
Bma01g02496 | 1608 | PRINTS | Prokaryotic DNA topoisomerase I signature | 1185 | 1201 | IPR013497 | GO:0003677|GO:0003916|GO:0006265 | |
Bma01g02496 | 1608 | PRINTS | Prokaryotic DNA topoisomerase I signature | 1107 | 1116 | IPR013497 | GO:0003677|GO:0003916|GO:0006265 | |
Bma01g02496 | 1608 | CDD | CAP_ED | 332 | 463 | IPR000595 | - | |
Bma01g02496 | 1608 | SUPERFAMILY | Voltage-gated potassium channels | 4 | 254 | - | - | |
Bma01g02496 | 1608 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 332 | 406 | IPR000595 | - | |
Bma01g02496 | 1608 | MobiDBLite | consensus disorder prediction | 1587 | 1608 | - | - | |
Bma01g02496 | 1608 | Gene3D | Topoisomerase I, domain 3 | 984 | 1284 | IPR013825 | - | |
Bma01g02496 | 1608 | PANTHER | BNAA01G05990D PROTEIN | 726 | 1599 | - | - | |
Bma01g02496 | 1608 | MobiDBLite | consensus disorder prediction | 505 | 524 | - | - | |
Bma01g02496 | 1608 | Gene3D | Jelly Rolls | 330 | 450 | IPR014710 | - | |
Bma01g02496 | 1608 | Hamap | DNA topoisomerase 1 [topA]. | 798 | 1561 | IPR028612 | GO:0003677|GO:0003916|GO:0006265 | |
Bma01g02496 | 1608 | SMART | topIban2 | 904 | 992 | IPR003601 | GO:0003677|GO:0003916|GO:0006265 | |
Bma01g02496 | 1608 | Pfam | Toprim domain | 800 | 913 | IPR006171 | - | |
Bma01g02496 | 1608 | ProSiteProfiles | Toprim domain profile. | 798 | 913 | IPR006171 | - | |
Bma01g02496 | 1608 | Gene3D | Topoisomerase I, domain 4 | 1060 | 1200 | IPR013826 | - | |
Bma01g02496 | 1608 | MobiDBLite | consensus disorder prediction | 709 | 786 | - | - | |
Bma01g02496 | 1608 | SUPERFAMILY | Prokaryotic type I DNA topoisomerase | 798 | 1424 | IPR023405 | - | |
Bma01g02496 | 1608 | MobiDBLite | consensus disorder prediction | 657 | 697 | - | - | |
Bma01g02496 | 1608 | Pfam | DNA topoisomerase | 928 | 1374 | IPR013497 | GO:0003677|GO:0003916|GO:0006265 | |
Bma01g02496 | 1608 | Pfam | Topoisomerase C-terminal repeat | 1540 | 1591 | IPR025589 | - | |
Bma01g02496 | 1608 | Pfam | Topoisomerase C-terminal repeat | 1479 | 1537 | IPR025589 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g02496 | Bma-Chr1:82671441 | Bma11g00665 | Bma-Chr11:12624647 | 0 | dispersed | |
Bma11g00485 | Bma-Chr11:6033947 | Bma01g02496 | Bma-Chr1:82671441 | 2.26E-14 | dispersed | |
Bma15g00775 | Bma-Chr15:16419280 | Bma01g02496 | Bma-Chr1:82671441 | 7.64E-15 | dispersed | |
Bma01g02496 | Bma-Chr1:82671441 | Bma08g00382 | Bma-Chr8:8627202 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g02496 | - | - | zju:107429950 | 1342.41 |