Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02496 ATGACGACTGATTCCAATTTGGAAATTACTTTGACATTTTTCCGGACAGTCGGAGATGTTTTCTACTTGTTGCATATTGTTTTTAAGTTTCGAACCGCCTATGTATCCCCGAGTTCGCGAGTTTTTGGCCGGGGCGAACTTGTGATGGATCCAAAAAAGATTGCTGGACGCTACTTGAGATCAGACTTCTTCATAGATCTGATAGCAACTCTACCCCTTCCTCAGATTGTAATTTGGTTTGTTATGCGGCAAGCTGATCATACAGACAATACCCTTGTACTGATTGTTTTGCTCCAATATGTTCCTAAATTGTATTTGATTTTCCCGTTAAGCGTTCTAGGAGCATCATGGTATCTATTGTCGTTAGAGCGGCACGCCTCTTGCTTGAAATCCGTATGCAGAAAGGAAATGGGTTCTAATTCAATGTGCTCTCTTGATTACCTGCTGTGTAGTAATTTGAATCTGGACAGTAGAAGGAGGTGGGAAGCAAATACTACTGTATTTAGCTACTGTAATCCAACTGAGGCTACAAGTTTCAACTATGGATTATTTGCAGATGCAATTGCAAAGAATGTCATCTACTCGAGTTTTTTCGAGAAGTATTTTTTCTGTCTTTGGTGGGGCCTGCAGAACTTGAGTTCTTATGGCCAGGGCCTGACTGCTAGTACATTTGTTGGAGAGACTGTTTTTGCTAGCTTCATTGCCATTGTGGGTCTGGTTTTGTTTGCCCATTTGATTGGAAATATGCAGACTTATTTGCAATCTATCTCGGTAAGGCTGGAGGAGTGGAGGCTCAAGCGAAGGGACACCGAGGAGTGGATGAAGCACCGCCAACTCCCTCGAGATCTACAAGAGCGTGTTCGTCGGTTTGTACTGTATAAATGGGTTGCAACCCGAGGTGTTGATGAAGAGTCAATCCTACGAGCCCTTCCTACGGACCTTCGCCGAGATATTCAACGCCACCTTTGCCTAGACTTGATTCGACGTGTCCCTTTTTTTGCACAAATGGACGATCAATTACTTGATGCAATATGCGAACGGTTAGTTTCGTCTTTAAGTACACAAGGCACTTACATCGTTCGTGAAGGTGACCTGGTGACCGAGATGCTCTTCATTATTCGAGGGAGGCTCGAGAGTTCTACAACAAACGGTGGTCGAAGTGGTTTCTTCAATTCAATAACATTAAGACCAGGAGATTTTTGTGGGGAAGAACTACTTTCGTGGGCATTGCTTCCAACATCATCAGCGAGCTTGCCTTGTTCGACCCGAACGGTTAAAACTCTCGTTGAAGTCGAAGCCTTCGCTCTCTATGCCGAAGATCTCAAATTCGTCGCTAATCAGTTTAAACGCCTCCATAGCAAGAAGCTTCAACACACGTTCCGATTCTACTCGCACCATTGGAGAACTTGGGCTTCCTGTTATATTCAATCTGCATGGCATCGACACCAAAAGCGGAAGATGGCAAAAACGCTTAGCGCTAAGGAATCATTCTACTTCACTCTGAAGAAGCCATCGATGGAAGGAACTGAACAAGAAGAGGGCGAGCCTCATTCTATGCATTCAAACAACTCGAACGTGAAACAGAACCTCGGAGTTACGATACTGGCTACCAGTGGCCTCACGGGTCTTGGTGATGGCCCTAAGCCTTTTTCGGTCATTCCATCCCGCTTAAAATATAATTTTCTTGATTCAGGGGTGTCTTTAAATGTTACTAGTCAAGGATCTTTGAACAATAAAATTGATTTTAGCTTTCTGAATTATGGATTTTTTGCAAAGAGGTTTCTCTCCCATGATACTGGGGTTGGAAACAAAATTAGCACCAAGAACTTAAATAATGCGAGAAGTGGATCATATAAAGGACTTACAAAAAATTGGAAGAAGGCAAAGGCAGTTACTGCTTTCAGTCATAAGAGCTCTTCTTCGTCCAACACCTTGGCCTCCTCAGAAGTTGATGCAAGGATGTCAGGTAAACTTCTAGGTGGACCTGTGGAGGAGAATTCTGAAATGGTATTATCTAGCTCTATCAAAGGTTCTAAAGTGAATAAGAAAAAAAAGTCAAGGACAAAAAAAAGCAAGGAAGAAAAATCTTCCATAGACGTAGCAGCTGAAGTTGATGCTTTAAAAAGTTCCAGGGATGTTGAAGACGGAAACTCCATTATAAGGAACCATGGTCATAATAAAGAATCCACGACAAAGGTAACTATGGAAAAGGTTACTGGCCATGCATCAACAAAACCTCAATCAAATAAGAAAAGAGCAAATTCTGGCTCTGAAGGCAAATCTGTAGAAGCTGCTAATGTGACCTCACAGAAACAAGCACAAGGAGCAAAAGGAAGGTTGAAACCTGAGGGACAGAAGACGATGATGAAGCAGCTATATCCTCCTACTGGAAAATCCGTTGTGGTGGTGGAGTCGGTTACAAAAGCAAATGTTATTCAAAAATATCTTGGTGGTATGTATGAAGTCTTGCCTAGCCATGGTCACGTAAGGGATTTGGCTGCAAGGTCAGGATCGGTGCGGCCTGATGACGATTTTAGTATGGTTTGGGAGGTTCCGGCAACTGCCTGGACCCATCTCAAGAGCATTAAGGTTTCATTGAGTGGAGCTGAAAATCTAATTCTTGCCTCTGATCCTGATCGTGAAGGAGAGGCCATTGCTTGGCACATTATTGAGATGCTGCAGCAACAAGATGCTTTGCATGAAGGGGTTAATGTATCCAGGGTTGTTTTTCATGAAATAACTGAGACATCTATCAAGAATGCTTTGCTATCTCCAAGAGAAATTGACGTCAATTTGGTTCACGCTTACCTTGCCCGTCGGGCATTAGATTATTTGATTGGATTTAACATTTCTCCATTGCTGTGGAGAAAACTACCAGGTTGCCCATCAGCTGGTCGTGTCCAATCTGCTGCACTTTCTCTTATATGTGATAGAGAAACAGAAATTGATGAATTTCGACCACAAGAGTATTGGACAATTATGGTCAAGTTGAATGAGATTATTTCTGGTTCTGCTGTACATGGGTTATCTGTCTCTGCACACTTGACCCATTTTAATCATGCAAAGTTGAATCAGTTTTCCATCAGTTCTTCTGTGGAGGCAAAGAATATTGAACATAAAATTCACTCGGAAAATTTTCAGGTTGTTAGTTCTAAAAAGAGCAAGATGCGTAAAAATCCTCCCATGCCATTTATAACATCAACACTTCAGCAGGATGCAGCTAATAAGTTGCATTTTTCTGCATCATATACAATGAGGTTTTTAATGCAGCTTGCTCAGAAACTTTACGAAGGGATCCAGTTGCCTGATGGTAGTGCTGTGGGTTTGATAACTTATACCAGAACAGATGGATTGCACATTTCTGATGAAGCTGTCAGGGACATTCGATCCATGGTTACTCAAAGGTATGGGCCTAATTTTGCTGTGGAGGGTCCTCACAAATACTTTAAGAAGGTCAAGAATGCTCAAGAGGCCCATGAAGCAATTAGACCCACTGATATAAGGAGGATACCATCAATGCTTGTTGAGGTTCTTGATGAAGACTCCCACAAATTATATTCTCTTATTTGGTCTCGGACAATGGCATGCCAAATGGAACCTTGCACCATTGAACAGATACAAGTCGATAGTGGAAGTGCTGGTGGTTCTATAATTTTCAGATCTGCATCCTCAAGAGTTCAGTTTCTTGGATATCAGGCAGTTTTTGAGGATTCAGAAGCCAAAGTTATAGGAAATAAAGAAAATGAAGTGAAAGGACGTGAAGAAGCTTTTGAAGTTCTAAGTTCATTGAAGGTGGGTGATCAAATGAATCTTAGTGAAATGGAGCTCAATCAACACTTTAGTCAGCCTCCTTCACGCTACTCTGAGGGAACCCTGGTTAAGAAGCTGGAGGAGCTAGGAATTGGAAGACCTTCGACTTATGCTATTACTTTAAAAGTATTACAGGACAGAAACTATGTGACAGTGAAAAACCGAGTACTCTATCCAGAATTTCGTGGGCGGATGGTGTCTGCATTTCTTGGTCACCTTTTTTCAGAGGTTACGGATTATAGTTTCACTGCTGATATGGAGACTGAGCTCGATAATGTATCTGCCGGTTTAACTGAGTGGAAAGGCCTCCTCAAAGATTATTGGACTCGGTTCAGCTCTTACTGTGATCATGCTAGTGGTGTTCATATTCATCAGGTGGAAAAGATGTTGGAAAAAAAATTTGGAGACTTTTTGTTTTCTTTTCTTTCCGATAAATGTAGGACGTGCCCCAGTTGTATGGAGGGCACTTTAATTTTCAAAGTAAGTCGATTTGGAGCAGGTTATTTCATAGGTTGTGACCAACATCCAAGGTGCAAGCACATTGCTAAGACATTATATGGTAATGATGATGAAGAAGGTACACCTCAAACTAACAGCGTAGAAGAACCTAAACTACTAGGTCTTCATCCAGGTTCCAATGAAAAGATTCTTTTAAAGAGTGGCCCTTACGGATCTTACGTACAGCTTGGTGAAGACAGAAAAGGATACTTGCCTAAAAGAGCATCCCTTTCCCATATAAAGGATGTTGACTCTGTTAAGCTCGAAGATGCCATCGAGTTACTACGTTATCCGGTGACTCTGGGCAACCATCCGAAGGATGGACAGCCAGTCTTAGTGAAGGTTGCGAAGTTTGGGTTTTCGATCAGACATAGACGGACGATGGCTCCTGTTCCTAAGAATCTGAAGCCTAATGAGATTAGCTTAGAGAAAGCCTTGGAACTTCTGTCGGGTAAAGACGTGAAACGAAGTGGCCGACCCAAGAAGAAGCGGGAGGAAGAATCCATTGAAGCCTTGTAG 4827 42.2 MTTDSNLEITLTFFRTVGDVFYLLHIVFKFRTAYVSPSSRVFGRGELVMDPKKIAGRYLRSDFFIDLIATLPLPQIVIWFVMRQADHTDNTLVLIVLLQYVPKLYLIFPLSVLGASWYLLSLERHASCLKSVCRKEMGSNSMCSLDYLLCSNLNLDSRRRWEANTTVFSYCNPTEATSFNYGLFADAIAKNVIYSSFFEKYFFCLWWGLQNLSSYGQGLTASTFVGETVFASFIAIVGLVLFAHLIGNMQTYLQSISVRLEEWRLKRRDTEEWMKHRQLPRDLQERVRRFVLYKWVATRGVDEESILRALPTDLRRDIQRHLCLDLIRRVPFFAQMDDQLLDAICERLVSSLSTQGTYIVREGDLVTEMLFIIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALLPTSSASLPCSTRTVKTLVEVEAFALYAEDLKFVANQFKRLHSKKLQHTFRFYSHHWRTWASCYIQSAWHRHQKRKMAKTLSAKESFYFTLKKPSMEGTEQEEGEPHSMHSNNSNVKQNLGVTILATSGLTGLGDGPKPFSVIPSRLKYNFLDSGVSLNVTSQGSLNNKIDFSFLNYGFFAKRFLSHDTGVGNKISTKNLNNARSGSYKGLTKNWKKAKAVTAFSHKSSSSSNTLASSEVDARMSGKLLGGPVEENSEMVLSSSIKGSKVNKKKKSRTKKSKEEKSSIDVAAEVDALKSSRDVEDGNSIIRNHGHNKESTTKVTMEKVTGHASTKPQSNKKRANSGSEGKSVEAANVTSQKQAQGAKGRLKPEGQKTMMKQLYPPTGKSVVVVESVTKANVIQKYLGGMYEVLPSHGHVRDLAARSGSVRPDDDFSMVWEVPATAWTHLKSIKVSLSGAENLILASDPDREGEAIAWHIIEMLQQQDALHEGVNVSRVVFHEITETSIKNALLSPREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCPSAGRVQSAALSLICDRETEIDEFRPQEYWTIMVKLNEIISGSAVHGLSVSAHLTHFNHAKLNQFSISSSVEAKNIEHKIHSENFQVVSSKKSKMRKNPPMPFITSTLQQDAANKLHFSASYTMRFLMQLAQKLYEGIQLPDGSAVGLITYTRTDGLHISDEAVRDIRSMVTQRYGPNFAVEGPHKYFKKVKNAQEAHEAIRPTDIRRIPSMLVEVLDEDSHKLYSLIWSRTMACQMEPCTIEQIQVDSGSAGGSIIFRSASSRVQFLGYQAVFEDSEAKVIGNKENEVKGREEAFEVLSSLKVGDQMNLSEMELNQHFSQPPSRYSEGTLVKKLEELGIGRPSTYAITLKVLQDRNYVTVKNRVLYPEFRGRMVSAFLGHLFSEVTDYSFTADMETELDNVSAGLTEWKGLLKDYWTRFSSYCDHASGVHIHQVEKMLEKKFGDFLFSFLSDKCRTCPSCMEGTLIFKVSRFGAGYFIGCDQHPRCKHIAKTLYGNDDEEGTPQTNSVEEPKLLGLHPGSNEKILLKSGPYGSYVQLGEDRKGYLPKRASLSHIKDVDSVKLEDAIELLRYPVTLGNHPKDGQPVLVKVAKFGFSIRHRRTMAPVPKNLKPNEISLEKALELLSGKDVKRSGRPKKKREEESIEAL 1608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82671441 82692937 - Bma003374.1 Bma01g02496 77013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02496 1608 SUPERFAMILY cAMP-binding domain-like 262 454 IPR018490 -
Bma01g02496 1608 SMART toprim5 798 898 IPR006171 -
Bma01g02496 1608 Pfam Ion transport protein 9 259 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma01g02496 1608 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 1093 1116 IPR023406 GO:0003917
Bma01g02496 1608 Gene3D Topoisomerase I, domain 2 938 1378 IPR013824 -
Bma01g02496 1608 SMART cnmp_10 332 463 IPR000595 -
Bma01g02496 1608 TIGRFAM topA_bact: DNA topoisomerase I 801 1451 IPR005733 GO:0003677|GO:0003917|GO:0006265
Bma01g02496 1608 Gene3D - 1 258 - -
Bma01g02496 1608 PANTHER DNA TOPOISOMERASE, TYPE IA, CORE 726 1599 IPR000380 GO:0003677|GO:0003917|GO:0006265
Bma01g02496 1608 MobiDBLite consensus disorder prediction 709 734 - -
Bma01g02496 1608 CDD TOPRIM_TopoIA_TopoI 798 925 IPR034149 -
Bma01g02496 1608 SMART topIaneu2 1052 1337 IPR003602 GO:0003677|GO:0003916|GO:0006265
Bma01g02496 1608 Gene3D - 795 934 - -
Bma01g02496 1608 CDD TOP1Ac 931 1384 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bma01g02496 1608 MobiDBLite consensus disorder prediction 735 775 - -
Bma01g02496 1608 Gene3D Helix hairpin bin 260 323 - -
Bma01g02496 1608 PRINTS Prokaryotic DNA topoisomerase I signature 962 980 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bma01g02496 1608 PRINTS Prokaryotic DNA topoisomerase I signature 872 885 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bma01g02496 1608 PRINTS Prokaryotic DNA topoisomerase I signature 1300 1314 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bma01g02496 1608 PRINTS Prokaryotic DNA topoisomerase I signature 1185 1201 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bma01g02496 1608 PRINTS Prokaryotic DNA topoisomerase I signature 1107 1116 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bma01g02496 1608 CDD CAP_ED 332 463 IPR000595 -
Bma01g02496 1608 SUPERFAMILY Voltage-gated potassium channels 4 254 - -
Bma01g02496 1608 ProSiteProfiles cAMP/cGMP binding motif profile. 332 406 IPR000595 -
Bma01g02496 1608 MobiDBLite consensus disorder prediction 1587 1608 - -
Bma01g02496 1608 Gene3D Topoisomerase I, domain 3 984 1284 IPR013825 -
Bma01g02496 1608 PANTHER BNAA01G05990D PROTEIN 726 1599 - -
Bma01g02496 1608 MobiDBLite consensus disorder prediction 505 524 - -
Bma01g02496 1608 Gene3D Jelly Rolls 330 450 IPR014710 -
Bma01g02496 1608 Hamap DNA topoisomerase 1 [topA]. 798 1561 IPR028612 GO:0003677|GO:0003916|GO:0006265
Bma01g02496 1608 SMART topIban2 904 992 IPR003601 GO:0003677|GO:0003916|GO:0006265
Bma01g02496 1608 Pfam Toprim domain 800 913 IPR006171 -
Bma01g02496 1608 ProSiteProfiles Toprim domain profile. 798 913 IPR006171 -
Bma01g02496 1608 Gene3D Topoisomerase I, domain 4 1060 1200 IPR013826 -
Bma01g02496 1608 MobiDBLite consensus disorder prediction 709 786 - -
Bma01g02496 1608 SUPERFAMILY Prokaryotic type I DNA topoisomerase 798 1424 IPR023405 -
Bma01g02496 1608 MobiDBLite consensus disorder prediction 657 697 - -
Bma01g02496 1608 Pfam DNA topoisomerase 928 1374 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bma01g02496 1608 Pfam Topoisomerase C-terminal repeat 1540 1591 IPR025589 -
Bma01g02496 1608 Pfam Topoisomerase C-terminal repeat 1479 1537 IPR025589 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02496 Bma-Chr1:82671441 Bma11g00665 Bma-Chr11:12624647 0 dispersed
Bma11g00485 Bma-Chr11:6033947 Bma01g02496 Bma-Chr1:82671441 2.26E-14 dispersed
Bma15g00775 Bma-Chr15:16419280 Bma01g02496 Bma-Chr1:82671441 7.64E-15 dispersed
Bma01g02496 Bma-Chr1:82671441 Bma08g00382 Bma-Chr8:8627202 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02496 - - zju:107429950 1342.41