Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02502 ATGGGTCGAAAGAAGCCGAATGCTCGGGAGGATGATGTGCCTGCTCAGGGAGGGGGTAAAGCAAAGAAGAAGGGGCTTTTAATAGACGACGACGAGTATTCCATTGGAACAGAAATATCTGAGGACTCGCAAGTTCAGGAGGAAACGGTTGCAACCACGGGGAAGAAGAAGGGTAGAAAGGGTAACTTAACAGCTTCACAATCAAAAGACGACGAAGAGGATGATGATTTTGTGCCGGAGATTGTTATCACTGGGAAAAAGAAGGGAAAATCAAAGAAGGGTAGTGGAAACAGCGTGTTTAGTGCATCAAGCTTTGGGTTGCTTGAGGAGGAAAACAATCAGGTTGTAAGCTTTTCAGGTAAGAAAAAGGGATCGAGGAATTCTAAGAAAACAGATAATTTGTTTAAAGACTCGTCGGCATTTGATGCCATTGATGATGAGAATGATGGAGAAGAGATTGATAGTGAGAGTAGGATTGACAAAGATGATGATGAGATTGTGCCAGTTATAACCGGAAAGAAGAAGCCATCCAAAGGTGGAAAGATAAGTAAGAGTACATTTCAAGCTTCAAATTTTGGTGGACTAAATGACGAAGATGATGATAAGGATGAAAAGAAAGATGTGGATGAAGATATTGCTCCTATTAGTTTCTCTGGTTTGAAAAAGAAGTCTTCCAATGCAACAAAGAGGAGTGGTAATCTTTTTAGTTCGACTGATGCTGGTGATGAAGGTCCTTCTGTATCAGAATCAGGCAGAGCTGGCGATGATCTCGTTGAGGATGGAGATGCCTCAGTTATTGCATTTTCTGGCAAGAAAAAGTCCTCAAAGAAGAAAAGTAATAGTGTTTTTGCTTCATTGGATGACATGAGTGCACTTGAAAGTGGAGTTGGAATTGGAGTTGAACCTGAAGTGCTGAGTGGTGGATCTAGTTATGTTGATGCTGACACCTCTGTGACCATCACGAAAGAGGTTGCAGAGTCTTCAAAAAATAAGAAAAAGAAGAAGAAGAGTGGAAGGACTGCTCAAGAGGAAGATGATTTGGATAAAATTCTTGCAGAGCTCGGTGAGGGACTGGCAGTACCAAAATCTGTTGTATCTGCTTCTCTTCCTCCAGAAGAGGTGAAATCTGATGTTCAACCTGAACCTGCTCTGCTTGTTGATGTGTCTGTGGAGAAGGAAGGTGAAGAAGAAAGTATGGAGTCAGCTGCAGCAAAGAAGAAGAAAAAGAAGAAGGAGAAGGAGAAGGAAAAGAAGGCTGCTGCGGCTGCTGTGGCTGCTGTGGCAGCAGCTGCAGATGAGAAGGCTGAAATAACTGAAGAAGTAAAAATCGAGATAGCAGAGCCTAAAAAGGGCACTGCTAAGAGTAAAGTTCCTGAGAAGAAAGTACCAAAGCATGTTAGGGAAATGCAGGAGGCAATGGCGAGGAGAAAAGAAGAGGAAGAAAGGAAAAAGAGGGAAGAAGAAGAGAAGTTGAGGAGGGAAGAGGAGGAAAGGCTTAGGCAAGAGGAACTTGAGAGGCAAGCAGAAGAAGCAAAGAGAAAGAAAAAGGAAAAAGAAAAGGAGAAGCTTCAGAGGAAGAAGTTGGAAGGCAAGCTTTTGACGGGGAAACAAAAGGAAGAACAGCGTAGGTTACAGGCAATGAAGAACCAATTTCTTGCAAACAGTGTGGGTTTGCCTCTTCCTGTTGCTGACTCTGGTGCACCAGTCAAACGACCCATTTACCAGACAAAGAAGACCAAAACAGCCCAACATCAAGCAAGTAGCGATGCATCTAAGGTAGTTGAGAACATAGAAGAAATTAAAAATCAGCCGGACCATGTGGCAGAGGTTGAATCTGTAGAGTTGAAAAAGATGGAAGATGTGGAAACAGTGAATGTGGATGAGAAATCTGAAATTTCTGAGCCTGTAGAAGATAATGGGTTGGAAGAAGAAGATGGCGATGAGGATGAATGGGATGCAAAGAGCTGGGATGATGCTGTCGTTGATCTTACTGTGAAAAGTGCATTTGCTAATGAAGAAGTTGACTCTGAAACAGAACTCGAGGTGAAGAAAGAGAAAAAGAGTGGCACACCAATTTCTGACCTTGCTGGTAATATATCATTTCCATGCTCTTTAATTCTCCTATTTTATTCAGATTCATATTTGCTTCGAAACTCATGTTGTTTCTCCCAAATGTTAATTTTTGGCACGTTCTTTTTTCTGGCAGCTACAAATGTTGGCAGCACACCAGCTCTTTCTGTCAACCACAGTTTTTCTTCCAAGGATGTTGAAGTTAGCAAAAAGCAGTCTGAGGTGGAAGTTGTGGATAATAACAAAAGAAAAAATGCTGTTGTTAAGAAGGAAGCTCCAAGATTAGATACTGCGTCTAAAAATAGTGAAAGTAATCTCCGTTCTCCCATTTGCTGTATTATGGGTCACGTTGACACTGGTAAAACCAAGCTTCTAGATTGTATCCGAGGAACTAATGTTCAAGAAGGTGAGGCTGGAGGTATTACCCAACAAATTGGAGCAACTTATTTTCCTGCAGAAAACATACGTGAAAGAACTAGAGAATTGAAAGCAGATGCAACTTTGAAAGTTCCTGGTCTACTTGTTATCGATACCCCTGGACATGAATCTTTCACCAACCTACGTTCCCGTGGTTCTGGTTTATGTGATATTGCAATTTTAGTTGTTGACATCATGCATGGTTTAGAGCCGCAAACAATAGAATCACTCAATTTATTGAAAATGAGGGACACAGAATTCATTGTTGCATTGAACAAGGTGGATAGACTGTATGGGTGGAAAACATGTCGAAATGCTCCAATTGTGAAGACAATGAAGCAGCAATCCAAGGACGTGCAGAATGAGTTTAATATGAGGCTCACACAGATTATCACTCAATTCAAAGAACAAGGTTTAAATACTGAATTATACTATAAAAATAAAGAAATGGGGGAAACTTTCAGTATAGTACCAACAAGTGCTATAAGTGGGGAAGGTATTCCAGATTTGTTATTACTACTGGTCCAGTGGTCTCAGAAAACTATGGTTGAAAAGCTTACTTACAGTGATGAAGTGCAGTGTACGGTGTTGGAGGTTAAGGTCGTTGAAGGCCATGGGACAACCATCGATGTTGTATTAGTTAATGGCGTGCTTCATGAAGGAGATCAAATAGTTGGTCCAATTGTTACTTCAATTCGGGCGCTATTGACACCACATCCAATGAAGGAACTCCGAGTTAAGTGTTTGTTTACGAATAATGGTTTCACCACTATTCTCTTACCTACCAGTTGCAGTAATATTTCCATAGTTGGCCCTTCTTTCTCTGTTGAACTGAACATCCATATCATGAATGTTCTTCCTATTTATCATATGGAATATGTGACCAAAAAATATGTCCTGTGGTTTCTAAGTGCAAATGTTTGGTTTGGCCTTGAGCATGCTATTGCCGGAACTGGTCTTTATGTGGTAGGTCCTGGCGACGACTTGGAAGACATTAAAGAATCATCCATGGAAGATATGAAGTCTGTCTTGAATAGGATTGACAAGAGTGGCGAAGGGGTTTGTGTGCAAGCATCTACACTGGGTTCGTTGGAAGCATTGCTGGAGTTTTTGAAGTCTCCTGCTGTTAGCATTCCTGTCAGTGGAATAAGCATTGGTCCTGTACATAAAAAAGATGTTATGAAGGCCAGTGTGATGCTTGAAAAGAAGAAGGAATATGCCACTATCTTGGCTTTTGATGTCAAAGTGACACCAGAGGCTCGTGAGCTTTCTGAGGAACTGGGTGTGAAAATTTTTATGGCGGACATCATTTATCACTTGTTTGATCAGTTTAAGGCATACATTGACAATATTAAAGAGGAAAAGAAGAAGGAAGCTGCTGAGGAAGCAGTATTTCCATGTGTCCTTAAGATTCTACCAAATTGTATTTTCAATAAGAAGGATCCAATCGTCTTGGGAGTGGATGTACTTGAAGGCATTGCCAAGCATTTTTTCTTGAAGGAAACTTTATTGATAATTGGCTCTTCCCCAGAGGAGCAGCAAAAGATGTTTGGTAGGCATTTTGAGCTCGAAGATGAACTTGATGATTTGTCCATCGAGGAGTGGAGGTTGGTGGTGAAATTGAAGACTCTTTTCAAGATACAATGA 4134 41.07 MGRKKPNAREDDVPAQGGGKAKKKGLLIDDDEYSIGTEISEDSQVQEETVATTGKKKGRKGNLTASQSKDDEEDDDFVPEIVITGKKKGKSKKGSGNSVFSASSFGLLEEENNQVVSFSGKKKGSRNSKKTDNLFKDSSAFDAIDDENDGEEIDSESRIDKDDDEIVPVITGKKKPSKGGKISKSTFQASNFGGLNDEDDDKDEKKDVDEDIAPISFSGLKKKSSNATKRSGNLFSSTDAGDEGPSVSESGRAGDDLVEDGDASVIAFSGKKKSSKKKSNSVFASLDDMSALESGVGIGVEPEVLSGGSSYVDADTSVTITKEVAESSKNKKKKKKSGRTAQEEDDLDKILAELGEGLAVPKSVVSASLPPEEVKSDVQPEPALLVDVSVEKEGEEESMESAAAKKKKKKKEKEKEKKAAAAAVAAVAAAADEKAEITEEVKIEIAEPKKGTAKSKVPEKKVPKHVREMQEAMARRKEEEERKKREEEEKLRREEEERLRQEELERQAEEAKRKKKEKEKEKLQRKKLEGKLLTGKQKEEQRRLQAMKNQFLANSVGLPLPVADSGAPVKRPIYQTKKTKTAQHQASSDASKVVENIEEIKNQPDHVAEVESVELKKMEDVETVNVDEKSEISEPVEDNGLEEEDGDEDEWDAKSWDDAVVDLTVKSAFANEEVDSETELEVKKEKKSGTPISDLAGNISFPCSLILLFYSDSYLLRNSCCFSQMLIFGTFFFLAATNVGSTPALSVNHSFSSKDVEVSKKQSEVEVVDNNKRKNAVVKKEAPRLDTASKNSESNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRDTEFIVALNKVDRLYGWKTCRNAPIVKTMKQQSKDVQNEFNMRLTQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWSQKTMVEKLTYSDEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVGPIVTSIRALLTPHPMKELRVKCLFTNNGFTTILLPTSCSNISIVGPSFSVELNIHIMNVLPIYHMEYVTKKYVLWFLSANVWFGLEHAIAGTGLYVVGPGDDLEDIKESSMEDMKSVLNRIDKSGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELSEELGVKIFMADIIYHLFDQFKAYIDNIKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVLEGIAKHFFLKETLLIIGSSPEEQQKMFGRHFELEDELDDLSIEEWRLVVKLKTLFKIQ 1377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82726800 82734044 - Bma003381.1 Bma01g02502 77019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02502 1377 MobiDBLite consensus disorder prediction 1 259 - -
Bma01g02502 1377 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1139 1324 IPR015760 -
Bma01g02502 1377 Gene3D - 790 1017 IPR027417 -
Bma01g02502 1377 MobiDBLite consensus disorder prediction 195 212 - -
Bma01g02502 1377 PANTHER PHOTOSYSTEM II PROTEIN D1 1139 1324 - -
Bma01g02502 1377 MobiDBLite consensus disorder prediction 446 542 - -
Bma01g02502 1377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 795 1078 IPR027417 -
Bma01g02502 1377 PRINTS GTP-binding elongation factor signature 800 813 IPR000795 GO:0003924|GO:0005525
Bma01g02502 1377 PRINTS GTP-binding elongation factor signature 864 874 IPR000795 GO:0003924|GO:0005525
Bma01g02502 1377 PRINTS GTP-binding elongation factor signature 880 891 IPR000795 GO:0003924|GO:0005525
Bma01g02502 1377 PRINTS GTP-binding elongation factor signature 916 925 IPR000795 GO:0003924|GO:0005525
Bma01g02502 1377 MobiDBLite consensus disorder prediction 125 143 - -
Bma01g02502 1377 MobiDBLite consensus disorder prediction 1 31 - -
Bma01g02502 1377 MobiDBLite consensus disorder prediction 390 407 - -
Bma01g02502 1377 PANTHER PHOTOSYSTEM II PROTEIN D1 767 1077 - -
Bma01g02502 1377 PANTHER PHOTOSYSTEM II PROTEIN D1 1334 1377 - -
Bma01g02502 1377 Pfam Translation-initiation factor 2 1161 1274 IPR023115 -
Bma01g02502 1377 CDD IF2_eIF5B 799 1009 - -
Bma01g02502 1377 TIGRFAM small_GTP: small GTP-binding protein domain 801 925 IPR005225 GO:0005525
Bma01g02502 1377 Gene3D Translation factors 1288 1336 - -
Bma01g02502 1377 MobiDBLite consensus disorder prediction 325 346 - -
Bma01g02502 1377 Coils Coil 462 531 - -
Bma01g02502 1377 PANTHER PHOTOSYSTEM II PROTEIN D1 1 693 - -
Bma01g02502 1377 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 796 1012 IPR000795 GO:0003924|GO:0005525
Bma01g02502 1377 Gene3D Translation factors 1018 1088 - -
Bma01g02502 1377 Gene3D - 1175 1281 IPR036925 -
Bma01g02502 1377 Coils Coil 392 423 - -
Bma01g02502 1377 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 767 1077 IPR015760 -
Bma01g02502 1377 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1334 1377 IPR015760 -
Bma01g02502 1377 MobiDBLite consensus disorder prediction 94 122 - -
Bma01g02502 1377 MobiDBLite consensus disorder prediction 144 159 - -
Bma01g02502 1377 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 693 IPR015760 -
Bma01g02502 1377 Pfam Elongation factor Tu GTP binding domain 800 1006 IPR000795 GO:0003924|GO:0005525
Bma01g02502 1377 MobiDBLite consensus disorder prediction 625 650 - -
Bma01g02502 1377 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1158 1287 IPR036925 -
Bma01g02502 1377 MobiDBLite consensus disorder prediction 390 415 - -
Bma01g02502 1377 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02502 Bma-Chr1:82726800 Bma07g01227 Bma-Chr7:47163420 3.22E-22 dispersed
Bma01g02502 Bma-Chr1:82726800 Bma04g00364 Bma-Chr4:2926167 1.95E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02502 K03243 - csv:101204360 1402.5