Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02505 ATGCTGGAGGCGCTGCAGCTTCCAATTACGGCTGAAGAAGATAGAGGGAGAGGCGGAGATGAAGGGGACCGGAGTTTCGGCGGTAATAGGTGGCCAAGACAAGAGACCTCAGCTCTTTTGAAGATTCGCTCCGATATGGAGGTTGCTTTCCGAGATGCAAGCGTTAAGGGTCCATTGTGGGAAGAAGTTTCCAGGAAACTCTCAGAGCTTGGATATCATCGAAGCTCCAAAAAATGCAAAGAGAAATTCGAAAACGTTTACAAATATCACAAAAGAACTAGAGAAGGGAGAAGCGGAAAACCAGATGGAAAAACCTACAGATTTTTCGATCAACTAGAAGCACTGGAAAGTCAGTTTCCTTCATTACCGTCCCTGTCTTCTTCACAGCAACCTAGACCTCAAGGTTCGATGGCTGCTACAACAATGGCTCAGGCGATCACTGTTACTAACCCTCATACAATGTCTCAAAGCTCTACTGTTCCATCAATGGCTGTTCATCACTTAATGGGTATGTCTCAAACGGTTCCTTCCTTTCAACATGGCAACCCGGCTATTTTTCCTCCTCCTTCTCAACCAAACCCTACAAATAATCCATTTCAAGCCGCCATTTCATCCTCTTTTCAGAACGTCGCCGCCGATCTTATTTCGAATTCTTCTTCTTCGTCAACCTCGTCGGATGAAAAATTGGAGAGCCGGAGGAGAAGAAAGAGGAAATGGAAGGACTTTTTCGAGAAGTTAATGAAGGAGGTGATCCATAAGCAAGAAGAGCAGCAGAAAAAATTCTTGGAAGCGGTGGAGAAACGCGAACACGAAAGAATGGTTAGAGAAGAAACTTGGAGGGCTCAGGAAATGGCGAAAATCAATAGGGAGAGAGAAATTCTCTCTCAAGAACGATCAATGGCTGCAGCTAAAGATGCTGCACTAATGTCGTTTCTACAGAAGATATCCGAACAGCAAAGCCAAAACCCTGGCCTGATTCTGAATTTCAGTCTTCCCCCATTGCAGCCGCCGCCTACAGCTCCGCCTCCGCAATCTGCGGCACCTCCTCTCCGATCTTTACAGTCGTCTGCAACGCCTTCAGGCACACCGGGACCTCTAGCAGTGCAACGGGCATCGACGGAATTAATCGAAGCAACACCTAAAACTGATAATGGCGACAATTACGAAGCGGCAACTTCTTCAAGATGGCCCAAAGTGGAAGTTGAAGCTCTGATAAGTTTACGTACAAATCTTGATTCCAAGTATCAAGAAAGTGGGCCAAAAGGGCCATTGTGGGAGGAGATCTCAGCCGCCATGCGAAAACTTGGATATAATCGAAATGCAAAGAGGTGTAAAGAGAAATGGGAGAACATCAACAAATACTTCAAAAAAGTGAAGGAAAGCCACAAGAAAAGGTCCGAGGATTCAAAAACATGCCCCTATTTTCACCAGCTCGACGCATTGTACAGAGAAAAAAACCAGTTTGATAGTTCGTCGTCAAACTTATTCAAGCCTGACAGTTCAATTGTGCCGCTAATGGTCCGACCTGAGCAACAATGGCCTCCCCAAACGCGACCTGACTCCGGCAATGACGACGTGGAAAGCGAGCCAATGGATCAACGACAGGAAAGTGATGACAAAGAAGGAGAAGACGAGGGAGAAGATGACGAAAGTGGTGGAAATTACGAAATTGTCGCTAGCAAACCAGCTTCAGTGGATGCAACCTGGTAA 1710 46.2 MLEALQLPITAEEDRGRGGDEGDRSFGGNRWPRQETSALLKIRSDMEVAFRDASVKGPLWEEVSRKLSELGYHRSSKKCKEKFENVYKYHKRTREGRSGKPDGKTYRFFDQLEALESQFPSLPSLSSSQQPRPQGSMAATTMAQAITVTNPHTMSQSSTVPSMAVHHLMGMSQTVPSFQHGNPAIFPPPSQPNPTNNPFQAAISSSFQNVAADLISNSSSSSTSSDEKLESRRRRKRKWKDFFEKLMKEVIHKQEEQQKKFLEAVEKREHERMVREETWRAQEMAKINREREILSQERSMAAAKDAALMSFLQKISEQQSQNPGLILNFSLPPLQPPPTAPPPQSAAPPLRSLQSSATPSGTPGPLAVQRASTELIEATPKTDNGDNYEAATSSRWPKVEVEALISLRTNLDSKYQESGPKGPLWEEISAAMRKLGYNRNAKRCKEKWENINKYFKKVKESHKKRSEDSKTCPYFHQLDALYREKNQFDSSSSNLFKPDSSIVPLMVRPEQQWPPQTRPDSGNDDVESEPMDQRQESDDKEGEDEGEDDESGGNYEIVASKPASVDATW 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82747969 82750263 + Bma003384.1 Bma01g02505 77022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02505 569 Pfam Myb/SANT-like DNA-binding domain 394 481 IPR044822 -
Bma01g02505 569 Pfam Myb/SANT-like DNA-binding domain 29 115 IPR044822 -
Bma01g02505 569 ProSiteProfiles Myb-like domain profile. 388 452 IPR001005 -
Bma01g02505 569 SMART sant 392 454 IPR001005 -
Bma01g02505 569 SMART sant 27 89 IPR001005 -
Bma01g02505 569 CDD GT1 394 459 - -
Bma01g02505 569 PANTHER - 15 561 - -
Bma01g02505 569 MobiDBLite consensus disorder prediction 13 28 - -
Bma01g02505 569 MobiDBLite consensus disorder prediction 538 552 - -
Bma01g02505 569 CDD GT1 29 94 - -
Bma01g02505 569 MobiDBLite consensus disorder prediction 489 569 - -
Bma01g02505 569 MobiDBLite consensus disorder prediction 324 366 - -
Bma01g02505 569 MobiDBLite consensus disorder prediction 349 366 - -
Bma01g02505 569 Gene3D - 396 457 - -
Bma01g02505 569 Gene3D - 31 92 - -
Bma01g02505 569 MobiDBLite consensus disorder prediction 1 31 - -
Bma01g02505 569 MobiDBLite consensus disorder prediction 216 235 - -
Bma01g02505 569 MobiDBLite consensus disorder prediction 522 537 - -
Bma01g02505 569 MobiDBLite consensus disorder prediction 330 348 - -
Bma01g02505 569 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 15 561 - -
Bma01g02505 569 ProSiteProfiles Myb-like domain profile. 29 87 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02505 Bma04g00367 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02505 Bma-Chr1:82747969 Bma04g00368 Bma-Chr4:2952372 1.26E-141 dispersed
Bma01g02505 Bma-Chr1:82747969 Bma01g02506 Bma-Chr1:82755583 2.67E-151 tandem
Bma09g00648 Bma-Chr9:43903555 Bma01g02505 Bma-Chr1:82747969 1.15E-06 transposed
Bma14g01358 Bma-Chr14:25261654 Bma01g02505 Bma-Chr1:82747969 1.37E-07 transposed
Bma13g00573 Bma-Chr13:12201969 Bma01g02505 Bma-Chr1:82747969 7.33E-07 transposed
Bma01g02505 Bma-Chr1:82747969 Bma04g00367 Bma-Chr4:2943805 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56812 PF13837 Myb_DNA-bind_4 8.40E-22 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02505 - - jre:109011419 637.106