Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02506 ATGGAGGGTGATTCGACTGTCTTTGAAGTCTCCGGTGAGGCGGTGGCTGCGCCACCGGAAGTTGCAGAAGGTGGGTCAAATTCCGGTGACGAAGATAAGGGTAGAGATGAGGAAGGGGACAAGAATTGTGGAGGAAATCGTTGGCCTCGACAAGAAACATTGGCGTTGTTGAAGATTCGCTTCGATATGGATTCAGTTTTTCGTGATTCAACTCTTAAAGGTCCTTTGTGGGAAGATGTCTCAAGGAAGCTAGGAGAGCTTGGATACAGCCGAAGTGCAAAGAAATGCAAAGAGAAATTCGAGAATGTATACAAATATCACAAGAGGACTAAAGAAGGAAGAAGTGGGAAAAAATCAGAAGGAAAATCCTATCGATTTTTCAATGAAATTGAAGCTCTTGAGAATCTTCACCCTTCTCAACAATGTCTTCCCAAACCTCAACCATCGCTCACAATTCTTCCGCCATGGACGACTGTCCCGTCCTCGCATTTTCATCAGTCTTTTCCGGTTCCATCCCCCGCCACCGTATTACCAAAGCCTTTGAATTCAAATTTCCCTCCTCCTCAATCAAACCTTATCAACAATTTTTCGCGAAACTTCTGCCCGAAAAACGGGAATTTTCTTTTCTCGAGCTCGACTTCGTCGTCGACCGCTTCAGACGAGGAGCTCGGGGGGAGACGTAAGAGAAAGAGGAAGTGGAAGGACTTCTTTAGGAGGATGGCTGAGGAGGTTATGGCTAAACAAGAGGGCTTGCAGATGAAATTCTTGGAGGCGTTGGAGAAGATAGAACACCAAAGATTTGTCAGAGAAGAGAGTTGGAGAATTCAAGAAATGGCGAGAATTAACAAAGAACATGAAATTTTAGTCCAGGAGATTTCCACTGCAACAGCAAAAGATGCAGCTATGGTTTCATTTTTGCAAAAGATCATGTCAGCTCAGCCGGATCAAACCCAATCAAAGGGAACTCCTCTTTCATTGCCTCCATTGTTACAACCTCCGCCGCCCCCGCCTGCAATTCCGCCGCCTAATTTGGACATCAAAAGGATCGAAAATGGTCGAAATTTGACACCCTTATCCGCCTCAAGATGGCCGAAAACAGAAGTGCAAGCTCTGATAAGCCTAAGAACAGGTCTTGATATGAAATATCAAGAAAATATACCAAAAGGGCCACTGTGGGAGGACATTTCAATGGCGATGAAAAAGCTCGGATACAACAGAAGCTCCAAGAGATGCAAAGAGAAATGGGAGAATATAAACAAATACTTCAAAAAAGTGAAGGAAAGCAACAGGAAAAGGACTGAAGATTCAAAGACTTGCCCATATTTCCAGCAACTTGATATCTTATATAGAGAGAAGAAGAAAACGGAAAGCTCATTCATTCCACAAATGGTGCCGTTGATGGTCCCACCAGAGCAACAATGGCCTCTTCCACAACAAAAACAGATAAACACTGAAATAGAAAATGGGCAACATAATCAAGAAGGAGAAAAACAAGAAGAAGAGGAAGAGGAGGGAGCAGCAGAAGAAGAAGAAGAAGTCAGTGAAGAAGATGCTGAAGGTGGCAGCTTTCAAATTGTCACAAATAAATCATCTTCCATGAACGCTGTCAATTGA 1614 43.62 MEGDSTVFEVSGEAVAAPPEVAEGGSNSGDEDKGRDEEGDKNCGGNRWPRQETLALLKIRFDMDSVFRDSTLKGPLWEDVSRKLGELGYSRSAKKCKEKFENVYKYHKRTKEGRSGKKSEGKSYRFFNEIEALENLHPSQQCLPKPQPSLTILPPWTTVPSSHFHQSFPVPSPATVLPKPLNSNFPPPQSNLINNFSRNFCPKNGNFLFSSSTSSSTASDEELGGRRKRKRKWKDFFRRMAEEVMAKQEGLQMKFLEALEKIEHQRFVREESWRIQEMARINKEHEILVQEISTATAKDAAMVSFLQKIMSAQPDQTQSKGTPLSLPPLLQPPPPPPAIPPPNLDIKRIENGRNLTPLSASRWPKTEVQALISLRTGLDMKYQENIPKGPLWEDISMAMKKLGYNRSSKRCKEKWENINKYFKKVKESNRKRTEDSKTCPYFQQLDILYREKKKTESSFIPQMVPLMVPPEQQWPLPQQKQINTEIENGQHNQEGEKQEEEEEEGAAEEEEEVSEEDAEGGSFQIVTNKSSSMNAVN 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82755583 82757683 - Bma003385.1 Bma01g02506 77023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02506 537 Coils Coil 490 519 - -
Bma01g02506 537 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 21 533 - -
Bma01g02506 537 CDD GT1 361 426 - -
Bma01g02506 537 ProSiteProfiles Myb-like domain profile. 361 419 IPR001005 -
Bma01g02506 537 MobiDBLite consensus disorder prediction 1 48 - -
Bma01g02506 537 ProSiteProfiles Myb-like domain profile. 46 104 IPR001005 -
Bma01g02506 537 Pfam Myb/SANT-like DNA-binding domain 46 133 IPR044822 -
Bma01g02506 537 Pfam Myb/SANT-like DNA-binding domain 361 446 IPR044822 -
Bma01g02506 537 MobiDBLite consensus disorder prediction 521 537 - -
Bma01g02506 537 MobiDBLite consensus disorder prediction 497 518 - -
Bma01g02506 537 CDD GT1 46 111 - -
Bma01g02506 537 SMART sant 359 421 IPR001005 -
Bma01g02506 537 SMART sant 44 106 IPR001005 -
Bma01g02506 537 PANTHER - 21 533 - -
Bma01g02506 537 MobiDBLite consensus disorder prediction 26 45 - -
Bma01g02506 537 MobiDBLite consensus disorder prediction 476 537 - -
Bma01g02506 537 Gene3D - 363 424 - -
Bma01g02506 537 Gene3D - 48 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02506 Bma-Chr1:82755583 Bma04g00368 Bma-Chr4:2952372 0 dispersed
Bma01g02505 Bma-Chr1:82747969 Bma01g02506 Bma-Chr1:82755583 2.67E-151 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56813 PF13837 Myb_DNA-bind_4 2.60E-20 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02506 - - zju:107421675 493.426