Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02507 ATGTCATTCCGCAGTATAGTACGCGATGTTAGGGACGGATTTGGAAGCTTTTCAAGGCGTAGTTTCGAGGTGAGGATCCCCGGCCACTACAGGGGGAAATCCCATGGGGCTGTCCATGAGTTGCACGATCACCCTCTTGTAATCCAAACCAGTCGATGGGCTAGTCTCCCACCCGAGCTATTGAGGGATGTGATAAAAAGATTGGAGGCTAGTGAGAGTACATGGCCTTCACGAAAGCATGTTGTCGCTTGTGCTTCTGTATGCAGATCATGGAGAGATATGTGCAAGGAAATCGTCCAAAGTCCAGAGTTTTCCGGCAAGATCACATTTCCTGTCTCCTTGAAGCAGCCAGGGTCTCGAGATGGAACTATTCAGTGCTTCATTAAGAGGGATAAAGCTAATTTAACTTACCGGCTTTTTCTTTGCCTCAGTTCTGCTTTACTTGTCGAGAATGGAAAATTCCTTCTCTCGGCAAAACGAACGAGGAGGACTACTTGCACAGAGTATGTGATCTCCATGGATGCTGACAATATATCGAGATCGAGCTGCACATACATTGGAAAACTAAGGTCAAATTTTTTGGGGACGAAATTCTTAATATTCGATACCCAACCTCCTTACAATAACGTGCAACTCTCCCCACCCGGTCGAAGCCGAAGATTTTACTCGAAAAAAGTTTCTCCAAAAGTGCCTACTGGCAGTTACAACATTGCCGAGGTTACGTACGAGCTGAATGTTTTAGGCACGCGCGGCCCACGCAGGATGCACTGCACCATGCATTCGATCCCCGTCTCAGCCATCGAGCCGGGAGGCTTCATCCCTGGCCAGCCGGAGCTCCTGGCCCGGTCCCTCGAGGACTCCTTCCGAAGCATTTCCTTCTCTAAAGTTGACAACTGCTCCGAGTTTAGCAGTTCTCGGTTCTCGGACATTGTTAGGTCAAATGAAGAACAAGAAGATGGTACAAAAGAGGAGATTCGGCCATTGATTCTTAAGAACAAAGCGCCCCGTTGGCACGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTGACCGTCGCCTCTGTCAAGAACTTTCAGCTGATAGCAGCGGAGGAATCACCTCCGGGGCCCCCTGCCCAGCCGCCCCAGTCAGACCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGAAAAGATATGTTCACCATGGATTATAGATATCCTTTATCTGCATTTCAAGCTTTTGCCATCTGTTTGAGCAGCTTCGACACGAAATTGGCCTGTGAATAG 1275 48.78 MSFRSIVRDVRDGFGSFSRRSFEVRIPGHYRGKSHGAVHELHDHPLVIQTSRWASLPPELLRDVIKRLEASESTWPSRKHVVACASVCRSWRDMCKEIVQSPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKANLTYRLFLCLSSALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSCTYIGKLRSNFLGTKFLIFDTQPPYNNVQLSPPGRSRRFYSKKVSPKVPTGSYNIAEVTYELNVLGTRGPRRMHCTMHSIPVSAIEPGGFIPGQPELLARSLEDSFRSISFSKVDNCSEFSSSRFSDIVRSNEEQEDGTKEEIRPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAEESPPGPPAQPPQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82764747 82768121 + Bma003386.1 Bma01g02507 77024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02507 424 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bma01g02507 424 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bma01g02507 424 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Bma01g02507 424 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bma01g02507 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Bma01g02507 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Bma01g02507 424 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Bma01g02507 424 Gene3D - 48 101 - -
Bma01g02507 424 PANTHER TUBBY-RELATED 1 424 - -
Bma01g02507 424 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
Bma01g02507 424 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 424 - -
Bma01g02507 424 SUPERFAMILY Tubby C-terminal domain-like 102 424 IPR025659 -
Bma01g02507 424 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Bma01g02507 424 Pfam Tub family 114 419 IPR000007 -
Bma01g02507 424 Pfam F-box domain 53 99 IPR001810 GO:0005515
Bma01g02507 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Bma01g02507 424 Gene3D Tubby Protein; Chain A 110 424 IPR025659 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02507 Bma04g00369 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02507 Bma-Chr1:82764747 Bma12g01166 Bma-Chr12:44318478 0 dispersed
Bma15g00428 Bma-Chr15:4645045 Bma01g02507 Bma-Chr1:82764747 1.25E-14 dispersed
Bma01g02507 Bma-Chr1:82764747 Bma04g00369 Bma-Chr4:2965742 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56814 PF01167 Tub 3.00E-115 CL0395 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02507 K19600 - qsu:111992792 752.666