Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g02507 | ATGTCATTCCGCAGTATAGTACGCGATGTTAGGGACGGATTTGGAAGCTTTTCAAGGCGTAGTTTCGAGGTGAGGATCCCCGGCCACTACAGGGGGAAATCCCATGGGGCTGTCCATGAGTTGCACGATCACCCTCTTGTAATCCAAACCAGTCGATGGGCTAGTCTCCCACCCGAGCTATTGAGGGATGTGATAAAAAGATTGGAGGCTAGTGAGAGTACATGGCCTTCACGAAAGCATGTTGTCGCTTGTGCTTCTGTATGCAGATCATGGAGAGATATGTGCAAGGAAATCGTCCAAAGTCCAGAGTTTTCCGGCAAGATCACATTTCCTGTCTCCTTGAAGCAGCCAGGGTCTCGAGATGGAACTATTCAGTGCTTCATTAAGAGGGATAAAGCTAATTTAACTTACCGGCTTTTTCTTTGCCTCAGTTCTGCTTTACTTGTCGAGAATGGAAAATTCCTTCTCTCGGCAAAACGAACGAGGAGGACTACTTGCACAGAGTATGTGATCTCCATGGATGCTGACAATATATCGAGATCGAGCTGCACATACATTGGAAAACTAAGGTCAAATTTTTTGGGGACGAAATTCTTAATATTCGATACCCAACCTCCTTACAATAACGTGCAACTCTCCCCACCCGGTCGAAGCCGAAGATTTTACTCGAAAAAAGTTTCTCCAAAAGTGCCTACTGGCAGTTACAACATTGCCGAGGTTACGTACGAGCTGAATGTTTTAGGCACGCGCGGCCCACGCAGGATGCACTGCACCATGCATTCGATCCCCGTCTCAGCCATCGAGCCGGGAGGCTTCATCCCTGGCCAGCCGGAGCTCCTGGCCCGGTCCCTCGAGGACTCCTTCCGAAGCATTTCCTTCTCTAAAGTTGACAACTGCTCCGAGTTTAGCAGTTCTCGGTTCTCGGACATTGTTAGGTCAAATGAAGAACAAGAAGATGGTACAAAAGAGGAGATTCGGCCATTGATTCTTAAGAACAAAGCGCCCCGTTGGCACGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTGACCGTCGCCTCTGTCAAGAACTTTCAGCTGATAGCAGCGGAGGAATCACCTCCGGGGCCCCCTGCCCAGCCGCCCCAGTCAGACCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGAAAAGATATGTTCACCATGGATTATAGATATCCTTTATCTGCATTTCAAGCTTTTGCCATCTGTTTGAGCAGCTTCGACACGAAATTGGCCTGTGAATAG | 1275 | 48.78 | MSFRSIVRDVRDGFGSFSRRSFEVRIPGHYRGKSHGAVHELHDHPLVIQTSRWASLPPELLRDVIKRLEASESTWPSRKHVVACASVCRSWRDMCKEIVQSPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKANLTYRLFLCLSSALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSCTYIGKLRSNFLGTKFLIFDTQPPYNNVQLSPPGRSRRFYSKKVSPKVPTGSYNIAEVTYELNVLGTRGPRRMHCTMHSIPVSAIEPGGFIPGQPELLARSLEDSFRSISFSKVDNCSEFSSSRFSDIVRSNEEQEDGTKEEIRPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAEESPPGPPAQPPQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 424 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 82764747 | 82768121 | + | Bma003386.1 | Bma01g02507 | 77024 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g02507 | 424 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Bma01g02507 | 424 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Bma01g02507 | 424 | PRINTS | Tubby superfamily signature | 348 | 364 | IPR000007 | - | |
Bma01g02507 | 424 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Bma01g02507 | 424 | PRINTS | Tubby superfamily signature | 402 | 424 | IPR000007 | - | |
Bma01g02507 | 424 | PRINTS | Tubby superfamily signature | 381 | 400 | IPR000007 | - | |
Bma01g02507 | 424 | PRINTS | Tubby superfamily signature | 330 | 347 | IPR000007 | - | |
Bma01g02507 | 424 | Gene3D | - | 48 | 101 | - | - | |
Bma01g02507 | 424 | PANTHER | TUBBY-RELATED | 1 | 424 | - | - | |
Bma01g02507 | 424 | ProSitePatterns | Tub family signature 1. | 348 | 361 | IPR018066 | - | |
Bma01g02507 | 424 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 424 | - | - | |
Bma01g02507 | 424 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 424 | IPR025659 | - | |
Bma01g02507 | 424 | SUPERFAMILY | F-box domain | 49 | 96 | IPR036047 | GO:0005515 | |
Bma01g02507 | 424 | Pfam | Tub family | 114 | 419 | IPR000007 | - | |
Bma01g02507 | 424 | Pfam | F-box domain | 53 | 99 | IPR001810 | GO:0005515 | |
Bma01g02507 | 424 | ProSitePatterns | Tub family signature 2. | 409 | 424 | IPR018066 | - | |
Bma01g02507 | 424 | Gene3D | Tubby Protein; Chain A | 110 | 424 | IPR025659 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g02507 | Bma04g00369 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g02507 | Bma-Chr1:82764747 | Bma12g01166 | Bma-Chr12:44318478 | 0 | dispersed | |
Bma15g00428 | Bma-Chr15:4645045 | Bma01g02507 | Bma-Chr1:82764747 | 1.25E-14 | dispersed | |
Bma01g02507 | Bma-Chr1:82764747 | Bma04g00369 | Bma-Chr4:2965742 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56814 | PF01167 | Tub | 3.00E-115 | CL0395 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g02507 | K19600 | - | qsu:111992792 | 752.666 |