Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02509 ATGGCGTCGGCGAATTCGATTAACTCGGATCCACCGCGACGCTCTTCGTCTTCTTCTTCCTCCGCTAGGAAAAGAAAAGCTCGATCTCATCAGAGCAAGCGGAAAGCCAATATTAATCAGAATCACAGCCATAATTTCGCCTCTATGACCTTTGATGGCCCCCTCCGCAATGTCCATGACTCCAATCCTGCTACTGACTCCACCTTCCTTGAAGCTCAGATAACCTCAGTGGATCCCTCTAACCTGAAAAACGCCTCTCCCGCCTTCAGTGGCAATCCTAATAATAGCTCCTCTATCGACCCCAAAACTTTGGATGATGTGTGGAGGGACATTGTATCCGGCACTTGCAAGGGGTTGAAGGAGGAGTGTCCTTACGATATGATGACGCTGGAGGATTTTCTGGCCAAAGCCGGGGCAGTGAACAGTGTCGAGCTGAAGGTGCCACCGTCCGAGAGATTCAGTGAGGGGAAGTTTGCGTTTGATCCCGTCCTGCCTAGTTCACTTCAATCTCTGGATAAAGTTGACGGGGCAATTGTTGCTTATGGAAACGGAATGGATGTGTTTGGCTGTGAAGGAAGTGGGAGATTAAAGAAAGTTAGGTCTCTTTTAGAGCCTTTAGATAAGGCTGCTCAGCAGCGGGAAAGAAGGATGATCAAAAACAGGGAGTCGGCAGCGAGGTCCAGGGAAAGGAAGCAGGCATATCAAGCTGAGTTGGAGTCTTTAGCAGTGAGACTAGAGGAGGAAAACGAACAGCTATTAAAGGAAAAGGTACTGCATTTATTGATGGAGAATATAATCCCGGTTGTTGAAAAGCGGAGGCCACCTCGTTTGCTTAGGAGAGTTCAATCCATGGAATGGTAG 861 48.43 MASANSINSDPPRRSSSSSSSARKRKARSHQSKRKANINQNHSHNFASMTFDGPLRNVHDSNPATDSTFLEAQITSVDPSNLKNASPAFSGNPNNSSSIDPKTLDDVWRDIVSGTCKGLKEECPYDMMTLEDFLAKAGAVNSVELKVPPSERFSEGKFAFDPVLPSSLQSLDKVDGAIVAYGNGMDVFGCEGSGRLKKVRSLLEPLDKAAQQRERRMIKNRESAARSRERKQAYQAELESLAVRLEEENEQLLKEKVLHLLMENIIPVVEKRRPPRLLRRVQSMEW 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82779991 82782049 - Bma003389.1 Bma01g02509 77026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02509 286 MobiDBLite consensus disorder prediction 19 37 - -
Bma01g02509 286 Coils Coil 224 255 - -
Bma01g02509 286 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 210 255 IPR004827 GO:0003700|GO:0006355
Bma01g02509 286 CDD bZIP_plant_BZIP46 212 263 - -
Bma01g02509 286 PANTHER BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR 4 285 - -
Bma01g02509 286 MobiDBLite consensus disorder prediction 1 18 - -
Bma01g02509 286 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 215 230 IPR004827 GO:0003700|GO:0006355
Bma01g02509 286 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 4 285 IPR043452 GO:0003700|GO:0045893
Bma01g02509 286 Pfam bZIP transcription factor 210 255 IPR004827 GO:0003700|GO:0006355
Bma01g02509 286 MobiDBLite consensus disorder prediction 1 64 - -
Bma01g02509 286 MobiDBLite consensus disorder prediction 81 102 - -
Bma01g02509 286 Gene3D - 210 263 - -
Bma01g02509 286 SMART brlzneu 208 266 IPR004827 GO:0003700|GO:0006355
Bma01g02509 286 SUPERFAMILY Leucine zipper domain 212 255 IPR046347 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02509 K14432 ABF; ABA responsive element binding factor - zju:107421670 296.589
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02509 Bma04g00371 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02509 Bma-Chr1:82779991 Bma03g00023 Bma-Chr3:270350 3.02E-12 dispersed
Bma04g01706 Bma-Chr4:53280979 Bma01g02509 Bma-Chr1:82779991 2.72E-44 transposed
Bma01g02509 Bma-Chr1:82779991 Bma04g00371 Bma-Chr4:2978451 1.86E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1370 Blo01g01730 . . Bda03g00393 Bpe02g00211 Bpe04g00355 Bma04g00371 Bma01g02509 Cmo04g02568 Cmo15g00598 . . Car01g00864 . . . . . . . . . . . . . . . . . . Cone4ag1498 Cone7ag1450 . . . . . . . . Bda11g00872 . . . . . . . . . . Car04g02360 Car15g00550 Cpe01g02120 . . . . . . . . . . . . . . . . . Chy03g00502 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003827 2 1 1 2 2 1 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 6 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56815 PF00170 bZIP_1 3.00E-13 CL0018 Bma TF