Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02515 ATGGATTCCTTCGTGCTAGCTGTTCTTGCAGCCATCGCCAGCTTCTTCGTCTTACTTCTGATCTTAGCCCTCTTCTTTTGTCTCTTCAAGAAACCCTCCTCTTCCCCCCCCTACCACCGCCAGATCCCAAATCGAGCAGCTAAAAGTAGAGATCTAACCTCGATCGCTGTCGAAGAGAGCGCTTCCTTTGATCCTTCCCTCCAAATTTCCATGCTCGACCTAAAAACAGCCACCAAGAATTTCTCCTCCGATCTCATAGTCGGCGACGGTTCCTTCGGCCTCGTCTACAAAGCCAATCTCCCCTCCGGCACCGCCGTCGCAATCAAGAAGCTCGATCCGGACGCTTTTCAAGGATTTCGGGAGTTCCGCGCCGAAATGGAAACACTGGGGAAGCTGCGCCACCGAAATCTGGTCAAGATGTTAGGGTACTGCAAATCAGGTGCTGACAGGCTGTTGATCTACGAGTTCATGGAGAGAGGATCTCTCGACATGTGCTTATACGACACGTCGTCCTCAGACCAGTCGGACAAGTCGACAGCGCGATTGCCGTTGTCATGGGCCACAAGGGTTAAGATAGTAAAAGGAGTGGCTAAGGGGCTTGCTTTTCTCCATGGGCTAGAAATGCCCATTATCCACCGTGACATAAAGGCCAGCAATGTACTACTGGACTCAAACTTTGAGGCCCATATTTCAGATTTCGGCCTAGCCCGGCTGATCGACACTTCAAATTCACACGTGTCAACTCAGGTAGCCGGAACGATGGGCTACATGCCGCCGGAGTACAAGAACGGGCACACGGGGGCGTCACCGAAATCTGACGTGTACAGTTTCGGCATCTTGATGTTCGAAATCGCAACATGCCGGAGGCCCAATTTGCCGGCGAAGATAGACGGGAAAGAATTGGTGCTAGCGGAGTGGGCCAGGAGAATGGTGGCCCAAAAGAGGGTGATGGAAATAGTGGATTCGAGCATACCAAGAGAGGGCCTGAAAGAGGGAAGCGTGGAAGAGTACTTCAAAATTGCTTGCCTGTGTACAACGGAGATATATAGAGCAAGGCCCCCAATGAGTGAGGTGGTTGAATTATTAGATAAAATTTAG 1098 51.18 MDSFVLAVLAAIASFFVLLLILALFFCLFKKPSSSPPYHRQIPNRAAKSRDLTSIAVEESASFDPSLQISMLDLKTATKNFSSDLIVGDGSFGLVYKANLPSGTAVAIKKLDPDAFQGFREFRAEMETLGKLRHRNLVKMLGYCKSGADRLLIYEFMERGSLDMCLYDTSSSDQSDKSTARLPLSWATRVKIVKGVAKGLAFLHGLEMPIIHRDIKASNVLLDSNFEAHISDFGLARLIDTSNSHVSTQVAGTMGYMPPEYKNGHTGASPKSDVYSFGILMFEIATCRRPNLPAKIDGKELVLAEWARRMVAQKRVMEIVDSSIPREGLKEGSVEEYFKIACLCTTEIYRARPPMSEVVELLDKI 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82814345 82815442 + Bma003395.1 Bma01g02515 77032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02515 365 Gene3D Phosphorylase Kinase; domain 1 42 156 - -
Bma01g02515 365 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Bma01g02515 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Bma01g02515 365 CDD STKc_IRAK 87 365 - -
Bma01g02515 365 PANTHER OS01G0253100 PROTEIN 1 364 IPR045271 GO:0004714|GO:0006468
Bma01g02515 365 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 364 - -
Bma01g02515 365 SMART serkin_6 81 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02515 365 Gene3D Transferase(Phosphotransferase) domain 1 157 365 - -
Bma01g02515 365 ProSiteProfiles Protein kinase domain profile. 81 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02515 365 SUPERFAMILY Protein kinase-like (PK-like) 63 362 IPR011009 -
Bma01g02515 365 Pfam Protein tyrosine and serine/threonine kinase 86 362 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02515 - - - cmo:103485602 446.817
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02515 Bma-Chr1:82814345 Bma13g00942 Bma-Chr13:40154326 1.22E-77 dispersed
Bma01g02515 Bma-Chr1:82814345 Bma04g01242 Bma-Chr4:36845565 5.49E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1346 . . . . Bpe02g00205 . . Bma01g02515 . Cmo15g00590 . . . . . . Cpe13g00693 Bhi04g01757 . . . . . Lcy10g1364 . . . . . . . . . . . . . . Cme03g00296 . . . . . . . . . . . . . Car04g02364 Car15g00542 Cpe01g02126 . . . . . . . . . . . . . . . Lsi08g00568 . Chy03g00493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010752 0 1 0 1 1 0 2 0 0 1 1 1 2 1 0 1 0 0 2 0 1 1 1 0 1 1 1 1 0 1 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66308 PF07714 PK_Tyr_Ser-Thr 5.80E-45 CL0016 Bma PK