Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02517 ATGGGTTGTGTTCAGTTCAAGTCTTCTGGGAACTCAACATCACAGAGCTTGGAGAAGCTGAAATTGGAAAACGGATATTCTGGGAAACCCGAGCTTATCGGCAAGAGAAGATCGTCCAAACCTCAAACTATCCAAAAAGATCCTAATAAACCTCACAGACGTCAACCCAGAAACTATAATGGCTTCGATCATGTCCTGAAAGACGGTGAAGAAGGTAAGAATCAAACTGGTTCTGAGAGAGTTTTATCTAAATCTCATGGAGAAGACGAACTGATTAATGGATGGCCAAAATGGTTGGCTGATAATGTTCCTAGTGAAGTTCTTGCTGGGGTGGTTCAAAAAACTGCTGATTCCTATGATAAACTTGCTAAGGTAGGCCAAGGAACTTATAGTAATGTGTACAAAGCTCGAGATCGAGACACTGGAAAAATTGTCGCGCTGAAGAAGGTTCGAGTTGACATATACGAACCGGAGAGCATTAAATTCATGGCAAGAGAGATCATGATATTGCAGAAATTGGATCATCCCAATGTCGTCAAACTCGAAGGATTGGCCACGTCAAGAATGCAATGGAGTCTTTATCTGGTTTTCGATTTCATGCAGACTGATTTATCGAGGGTCATTTCCCGCCCCGAAACTAGACTCACCGAGCCGCAGATCAAATGCTATATGCAACATTTACTGTCTGGTTTACGGCATTGTCACGATAAGGGAATATTACACCGAGATATCAAAGCGTCGAACCTTCTTATTGATAAAAATGGAATGCTAAAAATTGCGGATTTTGGCCTCGCCAATTACTTTCATCCAAAACCGAAGCGTTGTCTTACAAATCGGGTTGTGACCCTTTGGTATAGAGCCCCTGAGCTGTTATTAGGCAGTACAGATTATGGAGTTGGGATTGATCTTTGGAGTGCAGGATGCCTATTGGCGGAAATGTTCACTGGCAAACCGGTACTTCCCGGTCGAACAGAAGTTGAACAACTTCACCGGATTTTCAAGTTATGTGGGACGCCATCGGAAGAATACTGGCGAAAACTGAAGCTGCCATCAACTTTCAGACCTCCACAACTGTTGAAGCCTAGTCTTTCAGAAACATTTAAAATTTTACCCAATTCTTCTTTCCGTCTGTTGAGCACCCTACTGGCTCTCGACCCTGCATATCGCGGTTCTGCTTCTATGGCGCTACAAAACGAGTTATGTTTCATTTCCTTGCAGTTCTTTTACACAAAACCATTGGCGTGTGAGCTTTCTGGTCTACCAGTAGTACACAGCCTGGAAGATGACGATTTAAATAGAAGCAATAGCCAGAGAAGGCACAGGACGTCTGCAACGAAGCGTCGATCTACGTATCACGAGCGTCGGAGAAAAGATCCAACCTCTGCAATTTTTAATGAAAATTCTGTATTTTTCAACGAGGAGCTGAGAATGACGACCGATAGCAACACGCAGAGCGACGAGCGAGGGAGTACGACAACAAGTACGTCGTCTGGAGTAAACACAACAGTACAGAAAGAGAGCCCTCTTTTCTTGCCATCCCCAGTTGCCTTTCCTTCTAAGATGTCTTGCAGAAGCAGATCTAGCGGCTTTCTCGATGACAACGACGACATTTGTATGTTTCCCGGTTCAAGGAGACAATCGTCCAACTTCAACGATGGGAATGTCGTGCCGAGACGCGTGAGGAGGTCGGAATCCACTAGAGAGTTGAGAAATTGGAATGAAAAAGATAGATTGAAACTCTTTGACGATTGTTAG 1755 43.99 MGCVQFKSSGNSTSQSLEKLKLENGYSGKPELIGKRRSSKPQTIQKDPNKPHRRQPRNYNGFDHVLKDGEEGKNQTGSERVLSKSHGEDELINGWPKWLADNVPSEVLAGVVQKTADSYDKLAKVGQGTYSNVYKARDRDTGKIVALKKVRVDIYEPESIKFMAREIMILQKLDHPNVVKLEGLATSRMQWSLYLVFDFMQTDLSRVISRPETRLTEPQIKCYMQHLLSGLRHCHDKGILHRDIKASNLLIDKNGMLKIADFGLANYFHPKPKRCLTNRVVTLWYRAPELLLGSTDYGVGIDLWSAGCLLAEMFTGKPVLPGRTEVEQLHRIFKLCGTPSEEYWRKLKLPSTFRPPQLLKPSLSETFKILPNSSFRLLSTLLALDPAYRGSASMALQNELCFISLQFFYTKPLACELSGLPVVHSLEDDDLNRSNSQRRHRTSATKRRSTYHERRRKDPTSAIFNENSVFFNEELRMTTDSNTQSDERGSTTTSTSSGVNTTVQKESPLFLPSPVAFPSKMSCRSRSSGFLDDNDDICMFPGSRRQSSNFNDGNVVPRRVRRSESTRELRNWNEKDRLKLFDDC 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82820724 82823163 - Bma003397.1 Bma01g02517 77034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02517 584 MobiDBLite consensus disorder prediction 439 453 - -
Bma01g02517 584 SUPERFAMILY Protein kinase-like (PK-like) 114 398 IPR011009 -
Bma01g02517 584 ProSiteProfiles Protein kinase domain profile. 119 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02517 584 CDD STKc_CDK9_like 119 399 - -
Bma01g02517 584 Gene3D Phosphorylase Kinase; domain 1 108 201 - -
Bma01g02517 584 MobiDBLite consensus disorder prediction 1 85 - -
Bma01g02517 584 PANTHER CELL DIVISION PROTEIN KINASE 70 518 - -
Bma01g02517 584 MobiDBLite consensus disorder prediction 33 85 - -
Bma01g02517 584 PANTHER CYCLIN-DEPENDENT KINASE 70 518 - -
Bma01g02517 584 MobiDBLite consensus disorder prediction 476 507 - -
Bma01g02517 584 SMART serkin_6 119 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02517 584 MobiDBLite consensus disorder prediction 1 21 - -
Bma01g02517 584 MobiDBLite consensus disorder prediction 430 458 - -
Bma01g02517 584 Pfam Protein kinase domain 119 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02517 584 Gene3D Transferase(Phosphotransferase) domain 1 202 406 - -
Bma01g02517 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Bma01g02517 584 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02517 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - tcc:18592682 645.966
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02517 Bma-Chr1:82820724 Bma03g01044 Bma-Chr3:12470296 0 dispersed
Bma01g02517 Bma-Chr1:82820724 Bma12g00731 Bma-Chr12:33462028 4.47E-136 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1343 Blo01g01738 . . . . . . Bma01g02517 . . . Cma09g01247 Car01g00780 . . . . Bhi04g02165 . . . . . . Cla08g00325 Cam08g0756 Cec08g0290 . Clacu08g0468 . . Cone4ag1474 . . . . . . Cme03g00895 . . Bda11g00865 . . . . . . . Cmo09g01213 . . . Car09g01082 . . . . . . . . . . . . . . . . Lsi08g00253 . Chy03g00280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002491 3 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 0 1 2 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66309 PF00069 Pkinase 7.60E-68 CL0016 Bma PK