Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02519 ATGGGGAAGAAGCGTAAGTCCATCGCCTCTAGCCTCGACGAGGTCGATCGAACCATGTACGCCTCTTTTTGCAGTGCGGCTAACTCCCTCTCCCAGCTCTATACCCAGGCTACGAACCATCAGAAGTTATCCTTCCAAGCTGGGGAACGTCACGCTATGGAAAAACTTTATCAGTGGATCTGGAGGCAGCAAGAAGGAGGACCTAGAGTTACGACAAATGACGTACTTAGTTACTTACAGAACGAGCTGGACTACAATGGGGAGGAACCATCAATGTCTCCAAGGGCGCCCATTCATCATCAGCAGTCTCAACCTTTCATGAACTCAGGTTTTCCCCTGTCTTCAGGATCTTCAGGTCCAACCACTACAGGTCAAGGAGTTCGATCTGAACACTCCGATGGTCAATCAAAAAATTCAGTATTCTCAAACGCATTGTCGAGCCCCGTTCGTCGTAGTCTCCAGGACTATCACCTAGCTCAGGGAGTTTACAACCCAAACAGCGGTGGTCCTCACTTGGGAAACAGCGTCCGGAACAACGAACCAAGTTATCTTCAGCATCAGACCGGTAATACAAATCCCGTGACTTCAAACGATTCTTCCATGGAAGACAGTCCTAACGAATCGACTTATTAA 633 48.5 MGKKRKSIASSLDEVDRTMYASFCSAANSLSQLYTQATNHQKLSFQAGERHAMEKLYQWIWRQQEGGPRVTTNDVLSYLQNELDYNGEEPSMSPRAPIHHQQSQPFMNSGFPLSSGSSGPTTTGQGVRSEHSDGQSKNSVFSNALSSPVRRSLQDYHLAQGVYNPNSGGPHLGNSVRNNEPSYLQHQTGNTNPVTSNDSSMEDSPNESTY 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82828670 82831668 - Bma003399.1 Bma01g02519 77036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02519 210 PANTHER HOLOCARBOXYLASE SYNTHETASE 1 204 - -
Bma01g02519 210 Pfam Domain of unknown function (DUF4588) 16 198 IPR029196 -
Bma01g02519 210 PIRSF UCP009193 1 205 IPR016549 -
Bma01g02519 210 PANTHER NUCLEAR RECEPTOR FAMILY 2 GROUP C PROTEIN 1 204 - -
Bma01g02519 210 MobiDBLite consensus disorder prediction 167 210 - -
Bma01g02519 210 MobiDBLite consensus disorder prediction 96 148 - -
Bma01g02519 210 MobiDBLite consensus disorder prediction 86 148 - -
Bma01g02519 210 MobiDBLite consensus disorder prediction 160 210 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02519 - - - hbr:110652960 302.367
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02519 Bma-Chr1:82828670 Bma06g00542 Bma-Chr6:28587992 1.06E-46 dispersed
Bma01g02519 Bma-Chr1:82828670 Bma04g00383 Bma-Chr4:3081450 1.15E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1340 Blo01g01741 Blo12g00775 . Bda03g00403 Bpe02g00202 Bpe04g00367 . Bma01g02519 . . . . Car01g00860 . . Cpe06g00910 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00863 . . . . . Sed07g2827 . . . . . . . . Bhi09g01539 Tan01g3074 Cmetu01g0774 . . Mch11g1488 . Cla09g00950 Cam09g1001 Cec09g1004 Cco09g1014 . . Cre09g0965 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003826 3 1 2 2 2 1 3 1 2 1 1 1 2 0 1 3 1 3 2 1 1 1 1 1 2 1 1 1 1 2 45