Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02525 ATGGCGGCGGCGACTCCGGCTCCGGTTATTCAGGCTCAGGCAGCAGCCGCTCATCCAGTGGGAGGATTCTCTAACGCTTCGTTGTATGTCGGGGATCTTGACCCTAATGTGAATGAGGGGCAGTTGTTAGATCTGTTTAGCCAAATTGCTCAAGTTGTTAGTGTTAGGGTTTGTAGGGATCAGACTCGAAGGCAATCCCTCGGTTATGCTTATGTCAATTTCACTAATTCTCAGGATGCCATCAATGCCATGGAGGCTTTGAATTTTACTCCACTTAATGGGAAGCCCATAAGGATTATGTATTCTCACCGTGATCCTAGTATTCGGAAAAGTGGATTTGCAAATGTTTTTATTAAGAATCTAGATACCTCAATAGATAACAAGGCATTGCACGATACTTTTGCTCAATTTGGATCCGTTCTCTCTTGCAAGGTTGCTGTTGATGGAAATGGTCAATCAAGAGGTCATGGATTCGTGCAGTTTGAGAGTGAAAAATCTGCACAAAATGCTATTAGAAAATTGAATGGCATGCTGATTAATGATAAACAAGTTTATGTTGGGATTTTTATTCGGGGCCTCAAAAGGAATCAAGTTGAGGGATCTCCAAAGTTTACTAATCTTTATGTCAAGAATTTACCTGAAACAACTACTGACGATGACCTAAAGAAATTTTTTGACACTTTTGGTACTATCACAAGTGCTGTTGTTATGAAGGACGCAACTGGTAAATCGAAAGGTTTTGGTTTTGTTAACTTTCAGAACTTGGATGCAGCAGCTTATGCAGTTGAGAAGTTGAATGGAACCACTATTGGTGAGGACAGAGTTTTATATGTTGGTAGGGCTCAAAGGAAATCAGAGAGAGAGGCAGAGTTGAAAGCCAAATTTCAGCAAGAAAGAATTAGTAAATATGAAAAACTTCAAGGTGCTAATCTATACCTTAAAAATCTTGATGATGGTATCAGCGAAGAGAAACTGAAAGATTTATTCTCTGAGTTTGGAACAATAACATCGTGCAAGGTCATGATTGGTCAGCATGGGTTGAGCAAGGGTTCTGGTTTTGTGGCCTTTTCTTCGCCAGATGACGCAACAAGAGCTTTGAACGAAATGAATGGAAAGATGATTGGACGGAAGCCTCTATATGTTGCTGTGGCTCAGCGAAAGGAAGAAAGGAAGGCTAGACTTCAGGCACACTTTGCACAAATTCGAGCACCTAGTGGCATTGCCCCTCTTCCTACAGGAATTCCTGGATTTCATCCGGGTGCTAGACTTGCCCCTCAACCACTGTATTTTGGTCAAGGAACTCCTGGTATGATGCCCCCTCAGGCCGCCGGTTTTGGGTTCCAGCAGCAACTCCTACCAGGGATGCGGCCTGGTGTCACCCCAAACTTTATAGTTCCATATCAGCTTCAGAGGCAGAACCAACCTGGACAGCGAATGGGTGTTCGACGAGGGGGAAACCCCCACCCTCAGCAATTGCAGCAGCAACAGTTAATGCAGCGTAACTCTGGTCAAGGCTTTCGATACGTAAGCACTCCACGAAATGGTTTGGACCGATCTATCATGTCTCAAGGTCTCGTTGCCCCGATGATGCCTTTGGCGTTTGATGGTTCGGGAATGCCGTTTTCTCCAACTGATATCCAACACACCAGGCCTCCCATGTCAACTCTTGCTTCTGCTTTAGCCTCTGCTAACCCAGAGAGTCAGCGTGTGATGCTGGGTGAGCAGTTGTATCCGCTTGTGGAGCGGCTCGAGCCAGGAAATGCTGCGAAGGTGACGGGAATGCTGCTAGAGATGGACCAACCGGAGGTACTTCATCTCATCGAGTCTCCTGATGATTTGAAGAGTAAAGTGGCCGAGGCCTTGGAAGTCCTTCACAAAGCTGCAGTGGAGTCTGATGTTTCAGATCAACTTGGTTCAATGGCACTCAATGAATGA 1935 45.17 MAAATPAPVIQAQAAAAHPVGGFSNASLYVGDLDPNVNEGQLLDLFSQIAQVVSVRVCRDQTRRQSLGYAYVNFTNSQDAINAMEALNFTPLNGKPIRIMYSHRDPSIRKSGFANVFIKNLDTSIDNKALHDTFAQFGSVLSCKVAVDGNGQSRGHGFVQFESEKSAQNAIRKLNGMLINDKQVYVGIFIRGLKRNQVEGSPKFTNLYVKNLPETTTDDDLKKFFDTFGTITSAVVMKDATGKSKGFGFVNFQNLDAAAYAVEKLNGTTIGEDRVLYVGRAQRKSEREAELKAKFQQERISKYEKLQGANLYLKNLDDGISEEKLKDLFSEFGTITSCKVMIGQHGLSKGSGFVAFSSPDDATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAHFAQIRAPSGIAPLPTGIPGFHPGARLAPQPLYFGQGTPGMMPPQAAGFGFQQQLLPGMRPGVTPNFIVPYQLQRQNQPGQRMGVRRGGNPHPQQLQQQQLMQRNSGQGFRYVSTPRNGLDRSIMSQGLVAPMMPLAFDGSGMPFSPTDIQHTRPPMSTLASALASANPESQRVMLGEQLYPLVERLEPGNAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEALEVLHKAAVESDVSDQLGSMALNE 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82873009 82876454 - Bma003405.1 Bma01g02525 77042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02525 644 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Bma01g02525 644 SUPERFAMILY RNA-binding domain, RBD 204 390 IPR035979 GO:0003676
Bma01g02525 644 SMART poly_2 564 627 IPR002004 GO:0003723
Bma01g02525 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Bma01g02525 644 PANTHER POLYADENYLATE-BINDING PROTEIN 22 632 - -
Bma01g02525 644 SUPERFAMILY PABC (PABP) domain 492 628 IPR036053 GO:0003723
Bma01g02525 644 Gene3D - 294 398 IPR012677 -
Bma01g02525 644 Gene3D - 191 293 IPR012677 -
Bma01g02525 644 SMART rrm2_1 115 187 IPR003954 GO:0003676
Bma01g02525 644 SMART rrm2_1 310 382 IPR003954 GO:0003676
Bma01g02525 644 SMART rrm2_1 206 278 IPR003954 GO:0003676
Bma01g02525 644 SMART rrm2_1 27 100 IPR003954 GO:0003676
Bma01g02525 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Bma01g02525 644 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Bma01g02525 644 Gene3D - 549 629 - -
Bma01g02525 644 SMART rrm1_1 310 382 IPR000504 GO:0003723
Bma01g02525 644 SMART rrm1_1 115 187 IPR000504 GO:0003723
Bma01g02525 644 SMART rrm1_1 206 279 IPR000504 GO:0003723
Bma01g02525 644 SMART rrm1_1 27 100 IPR000504 GO:0003723
Bma01g02525 644 CDD RRM3_I_PABPs 204 284 - -
Bma01g02525 644 CDD RRM4_I_PABPs 308 386 - -
Bma01g02525 644 Gene3D - 115 188 IPR012677 -
Bma01g02525 644 CDD RRM1_I_PABPs 27 106 - -
Bma01g02525 644 SUPERFAMILY RNA-binding domain, RBD 26 190 IPR035979 GO:0003676
Bma01g02525 644 Coils Coil 286 306 - -
Bma01g02525 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Bma01g02525 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Bma01g02525 644 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 26 624 IPR006515 GO:0003723
Bma01g02525 644 CDD RRM2_I_PABPs 112 187 IPR045305 -
Bma01g02525 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Bma01g02525 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Bma01g02525 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Bma01g02525 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 272 IPR000504 GO:0003723
Bma01g02525 644 PANTHER RNA BINDING PROTEIN 22 632 - -
Bma01g02525 644 Gene3D - 13 114 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02525 Bma-Chr1:82873009 Bma08g00805 Bma-Chr8:45649075 0 dispersed
Bma05g01304 Bma-Chr5:52331285 Bma01g02525 Bma-Chr1:82873009 7.91E-15 dispersed
Bma14g00494 Bma-Chr14:5567665 Bma01g02525 Bma-Chr1:82873009 4.66E-06 dispersed
Bma01g02525 Bma-Chr1:82873009 Bma03g00511 Bma-Chr3:3976725 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02525 K13126 - zju:107421570 947.962