Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02527 ATGAGGGGCGACCAGAGAACATTCATCAGCTTCCAAAATTTCTGCTTTCTACTCTTTCTTTTCGTTCAATTCCAAGCCTGTTTTTCTCAGTATAACTTTGTGGTGAAAGAAGCTCGATATAAAAGGCTGTGTCACAAAAAGAACATTTTGACAGTAAATGGACAGTATCCAGGACCAACCATATATGCAAGGAGAGGAGAAACAATCTATGTCACTGTTTATAACAAGGGCAAAGACAACATCACTCTTCACTGGCACGGAGTAAAATTACCGAGATATCCTTGGTCGGACGGTCCGGAGTACATTACTCAATGTCCGATCAAACCCGGAGGAGTGTTCCGGCAGAAGGTTATATTCTCGTCGGAGGAAGGGACTCTATGGTGGCATGCTCATAGTACTTGGTACAGAGCCACAGTTCATGGGGCTTTAATTGTTTATCCAAAGGAGGGAAAAAACTACCCTTTTCCTCAGCCTTATGAAGAGGTTCCCATCATATTAGGAGAATGGTGGAAGAAGGACATAAAGCAGGTTTATGAGCTCTTTCTGAGAACCGGAGGAGACCCCAACGTCTCTAATGCTCTGACAATCAATGGTCAACCCGGCGACCTCTATCACTGTTCAAGATCCAAAACATTCAAGCTAGCTGTGGATGAAGGAAAGTCATATCTTCTCCGGTTCGTCAACGCCGCCATGAACATCATCTTCTTCTTCTCCATCTCAAATCACAACCTCACAGTTGTCGGAATAGACGGAAGCTACACAAAGCCGTTATCTACAGATTTCATCGTCATCTCTCCCGGCCAAACCCTAGACGCTTTGCTTTACACAGACCAAAACCCTAATCATCGTTATTACATGGCAGGTAGGGCTTACGCAAGTAACCTGAATGTCTCTTTTGATAACACCACTACTACAGCTATTCTGGAGTATAAAAAGAGAAGTTCCAGTAACAGAAGTTCATCTCCTTTGTTCCCTTATCTTCCTTATTACAACGACACAAACGCCAGTTTCAGCTTTTTTGGATCTCTTAGAAGCTTAGTTGACGAAGAACATCCCATTTATCTTCCTCTAAATACAACAACCAATCTGGTTTCCACTGTTTCCATCAATACTTTTCCTTGTGAACGTAATAATTCTTGTGAAGGTCCTAATGGCACTCGCCTAGCAGCTAGCATGAACAACATGAGCTTTGTACTTCCATCGGTCGACATCTTAGAAGCTTATTACTATAACATTCATCGGGTTTTCAGCAAGAACTTTCCGAGTTTTCCGCCGTACGTCTTTAATTACACCGCCGATTATCTACCGTTGATCTTGGAGATACCGAAAAGGGGGACGAGGGTGAAAGTTCTCCCTTACAATTCGGCCGTCGAACTCGTTTTGCAAGGAACAAACGTTGTTGCTGCGATTGACCATCCTATGCATCTTCATGGATATAGCTTCTACGTTGTTGGATTTGGATTTGGGAACTTTAATGAATCTACAGATCCTATGAATTATAATCTTGTTGACCCTCCTCGTAGAAATACAGCTACTGTTCCAATAAATGGATGGATTGCCATCAGATTCATCGCGAACAATCCAGGAGTTTGGTTCATGCATTGCCATTTTGAGAGGCACTTAGCATGGGGAATGGAGACAGTGTTCATAGTAAGGAATGGCAAGAAGAGAGGAGAAAAGATGTTACCTCCACCCCCAGACATGCCTCCCTGCTGA 1716 43.12 MRGDQRTFISFQNFCFLLFLFVQFQACFSQYNFVVKEARYKRLCHKKNILTVNGQYPGPTIYARRGETIYVTVYNKGKDNITLHWHGVKLPRYPWSDGPEYITQCPIKPGGVFRQKVIFSSEEGTLWWHAHSTWYRATVHGALIVYPKEGKNYPFPQPYEEVPIILGEWWKKDIKQVYELFLRTGGDPNVSNALTINGQPGDLYHCSRSKTFKLAVDEGKSYLLRFVNAAMNIIFFFSISNHNLTVVGIDGSYTKPLSTDFIVISPGQTLDALLYTDQNPNHRYYMAGRAYASNLNVSFDNTTTTAILEYKKRSSSNRSSSPLFPYLPYYNDTNASFSFFGSLRSLVDEEHPIYLPLNTTTNLVSTVSINTFPCERNNSCEGPNGTRLAASMNNMSFVLPSVDILEAYYYNIHRVFSKNFPSFPPYVFNYTADYLPLILEIPKRGTRVKVLPYNSAVELVLQGTNVVAAIDHPMHLHGYSFYVVGFGFGNFNESTDPMNYNLVDPPRRNTATVPINGWIAIRFIANNPGVWFMHCHFERHLAWGMETVFIVRNGKKRGEKMLPPPPDMPPC 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82885021 82887530 - Bma003407.1 Bma01g02527 77044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02527 571 ProSitePatterns Multicopper oxidases signature 1. 529 549 IPR033138 -
Bma01g02527 571 Pfam Multicopper oxidase 35 149 IPR011707 GO:0005507
Bma01g02527 571 TIGRFAM laccase: laccase 29 571 IPR017761 GO:0046274|GO:0048046|GO:0052716
Bma01g02527 571 Pfam Multicopper oxidase 160 312 IPR001117 -
Bma01g02527 571 CDD CuRO_1_LCC_plant 31 147 IPR034288 GO:0005507
Bma01g02527 571 Gene3D - 28 150 IPR008972 -
Bma01g02527 571 SUPERFAMILY Cupredoxins 26 172 IPR008972 -
Bma01g02527 571 PANTHER MULTI-COPPER OXIDASE 18 571 IPR045087 -
Bma01g02527 571 SUPERFAMILY Cupredoxins 155 348 IPR008972 -
Bma01g02527 571 PANTHER LACCASE 18 571 - -
Bma01g02527 571 Pfam Multicopper oxidase 443 554 IPR011706 GO:0005507|GO:0016491
Bma01g02527 571 Gene3D - 159 348 IPR008972 -
Bma01g02527 571 ProSitePatterns Multicopper oxidases signature 2. 534 545 IPR002355 GO:0005507
Bma01g02527 571 CDD CuRO_2_LCC_plant 162 310 IPR034285 -
Bma01g02527 571 SUPERFAMILY Cupredoxins 382 571 IPR008972 -
Bma01g02527 571 CDD CuRO_3_LCC_plant 415 554 IPR034289 GO:0005507
Bma01g02527 571 Gene3D - 376 571 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02527 K05909 E1.10.3.2; laccase [EC:1.10.3.2] K19791 twl:119993258 785.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02527 Bma-Chr1:82885021 Bma03g00220 Bma-Chr3:1652223 0 dispersed
Bma01g02527 Bma-Chr1:82885021 Bma01g02529 Bma-Chr1:82950340 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1314 . . . . . . . Bma01g02527 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme03g00284 . . Bda11g00855 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484