Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02529 ATGTTGGTCGTAAATGGCATGTTTCCTGGTCCGACGATCCATGTTCGTAAAGGCGACGTGGCTTTCGTGAATGCCATCAACAAAGGATCTTATGGCGTCACACTGCACTGGCATGGAGTGAAGCAGCCGAGGAATCCATGGTCGGATGGGCCAGAAAACATAACGCAGTGTCCGATAAAACCAGGCCATAATTTCACGTACGAGGTTATATTCTCTACTGAAGAAGGGACCCTTTGGTGGCACGCTCACAGTGACTGGACTCGAGCCACCGTGCATGGCGCGATTGTCATTTCACCGCCCGTTGGAGATTCTTTCCCTTTCCCCAAACCTTACGCAGAAAAAGTCATTGTGTTAGCTGAATGGTACAAAGAACATGTCATGGAAATAATAACAACTGCCTTAGCATCAGGTGGTGACCCAAATAGATCTGATGCCTACACCATCAATGGTTTCGTGGGATCATTATCCAACTGTTCTTCAGATCTGACGTACAACTTGACAGTAACTCAAGGAAACACCTATCTTTTGAAAGTAGTCAATGCAGCGATGAATGAAGCCCACTTTTTTGGAATAGCCAATCATACAGTGACTGTAGTAGCTCAAGATGGTGCCTATATAAAACCATTCGTTTCATCTTATATAATGATAACTCCAGGCCAGACCATGGATCTTTTACTCACAGCAAATCAATCTCCAAGCTACTACTACATGGCCGCTTATCCATTCTTTGATAGTCAAGCTCTCTATCAAGATTTCACAGTCACAGCAGTGGTGAAATATGAAGGAAACTACACTCCTCCATCGTCTCCTGTGTTTCCAGATCTGCCTGAAACTTCGAATGAAACTGCTGCTTTTGAGTTTGGGAAGAAAATCAAGGCCTTGGCTACTGAGAAATATCCTATTCATTTTCCTAGGGGTTCGGTTGATGAGAAGATGCTTATTACTGTTTCTATTGCTGAGATTTTATGCGCAAATTCTTCCTGTAGTGGGCCAGACGGTAATAGAATTTCTTCTAGCTTAAACAACATAAGCTTTGACACCCCCCAAATTGATGTTTTGCAAGCATACGTGAGAAATATCTCGGGAGTCTATGACCCAACTTTCCCAGACTACCCCAACTTTTATAACTTCACAGGAGATGTTGGAAATAACACTCTACATCCAACAGTTGCGACGAGAGCCAAGATGTTTGACTTTAACGCATCAGTTGAAGTTGTCTTCCAAGGCACCAACGTTATTGCTGCTGAGAGCCATCCCATTCATCTCCATGGATTCAGTTTCTTCTTGGTCGGGAGTGATTTCGGTAACTTTAATGATTCTAGCAACCAAACCTACAACTTGGTTGATCCTCCGGAAATTAACACTTTTTCTCTTCCGAGAAACGGTTGGTCGGCCATTCGATTCTATGCTGACAATCCCGGTGTGTGGTTTCTACACTGTCATTTCGAGAGACATGCTAGCTGGGGTATGGAGACGGTATTCATAGTGAAAAATGGAACAACCCCAGAGACCAGTTTGATGCCCCCTCCATCTGGTCTTCCTACATGTTCCTAG 1554 44.02 MLVVNGMFPGPTIHVRKGDVAFVNAINKGSYGVTLHWHGVKQPRNPWSDGPENITQCPIKPGHNFTYEVIFSTEEGTLWWHAHSDWTRATVHGAIVISPPVGDSFPFPKPYAEKVIVLAEWYKEHVMEIITTALASGGDPNRSDAYTINGFVGSLSNCSSDLTYNLTVTQGNTYLLKVVNAAMNEAHFFGIANHTVTVVAQDGAYIKPFVSSYIMITPGQTMDLLLTANQSPSYYYMAAYPFFDSQALYQDFTVTAVVKYEGNYTPPSSPVFPDLPETSNETAAFEFGKKIKALATEKYPIHFPRGSVDEKMLITVSIAEILCANSSCSGPDGNRISSSLNNISFDTPQIDVLQAYVRNISGVYDPTFPDYPNFYNFTGDVGNNTLHPTVATRAKMFDFNASVEVVFQGTNVIAAESHPIHLHGFSFFLVGSDFGNFNDSSNQTYNLVDPPEINTFSLPRNGWSAIRFYADNPGVWFLHCHFERHASWGMETVFIVKNGTTPETSLMPPPSGLPTCS 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82950340 82953647 - Bma003410.1 Bma01g02529 77046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02529 517 ProSitePatterns Multicopper oxidases signature 2. 479 490 IPR002355 GO:0005507
Bma01g02529 517 CDD CuRO_2_LCC_plant 115 260 IPR034285 -
Bma01g02529 517 SUPERFAMILY Cupredoxins 332 516 IPR008972 -
Bma01g02529 517 PANTHER LACCASE 1 516 - -
Bma01g02529 517 TIGRFAM laccase: laccase 2 516 IPR017761 GO:0046274|GO:0048046|GO:0052716
Bma01g02529 517 Gene3D - 321 517 IPR008972 -
Bma01g02529 517 SUPERFAMILY Cupredoxins 2 126 IPR008972 -
Bma01g02529 517 Pfam Multicopper oxidase 114 263 IPR001117 -
Bma01g02529 517 ProSitePatterns Multicopper oxidases signature 1. 474 494 IPR033138 -
Bma01g02529 517 CDD CuRO_3_LCC_plant 363 499 IPR034289 GO:0005507
Bma01g02529 517 PANTHER MULTI-COPPER OXIDASE 1 516 IPR045087 -
Bma01g02529 517 Gene3D - 1 100 IPR008972 -
Bma01g02529 517 Pfam Multicopper oxidase 2 100 IPR011707 GO:0005507
Bma01g02529 517 Gene3D - 112 296 IPR008972 -
Bma01g02529 517 SUPERFAMILY Cupredoxins 107 282 IPR008972 -
Bma01g02529 517 Pfam Multicopper oxidase 383 498 IPR011706 GO:0005507|GO:0016491
Bma01g02529 517 CDD CuRO_1_LCC_plant 2 99 IPR034288 GO:0005507
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02529 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - jre:109008603 726.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02529 Bma-Chr1:82950340 Bma03g00987 Bma-Chr3:10580913 6.57E-168 dispersed
Bma01g02527 Bma-Chr1:82885021 Bma01g02529 Bma-Chr1:82950340 0 proximal
Bma01g02529 Bma-Chr1:82950340 Bma01g02530 Bma-Chr1:82995462 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1313 . . . . Bpe02g00194 . . Bma01g02529 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00854 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484