Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02531 ATGGAGCAAGGCCAGGTTTGGAATCTGGCTTGTATATGCTTGATCTTGCTGCTTCGTCCCTTATGGCTGATTTCTGCTAACATGGAAGGAGATGCTCTTCACAGCCTTAGAAGCAGCTTGCAGGATCCCAACAATGTACTTCAGAGTTGGGATCCTACCCTTGTCAATCCATGCACTTGGTTTCATGTTACATGCAACAATGATAATAGTGTTATAAGAGTAGATCTTGGAAATGCAGCTTTATCTGGTCGACTTGTTCCACAACTGGGCCTATTAAAGAACTTGCAGTATCTGGAACTTTACAGTAATAACATTAGCGGAATAATTCCTACTGACCTTGGGAATCTGACTAGTTTGGTGAGCTTGGATCTTTACTTGAATGGCTTTACGGGTCTTATTCCTGAGACATTGGGGAAGCTGTCTAAATTGCGATTCCTCCGGCTCAACAACAACAGCTTGTCTGGTCCCATTCCAATGTCGTTGACTAATATTTCTTCCCTTCAAGTGTTAGATCTGTCAAACAACCATTTATCAGGAGTTGTTCCAGACAATGGTTCTTTCTCCCTGTTCACTCCCATCAGTTTTGCTAACAATTTCGATCTATGCGGTCCTGTTACTGGACATCCTTGCCCAGGATCTCCTCCATTCTCTCCTCCTCCCCCATTTGTTCCCCCACCTCCAATTTCTACACCAGGGGGAAATAGTGCAACTGGGGCAATTGCTGGTGGAGTTGCTGCAGGTGCAGCCTTACTTTTTGCTGCTCCTGCAATTGCATTTGCATGGTGGCGTCGAAGAAAACCGCAAGAATATTTCTTTGATGTGCCAGCCGAGGAGGACCCCGAAGTTCATCTTGGACAGCTTAAAAGGTTCTCTTTGCGAGAATTACAAGTTGCAAGTGATAGTTTTAGTAATAAAAACATTCTGGGTAGGGGTGGATTTGGTAAAGTTTACAAAGGCCGCTTAGCTGATGGTTCCCTTGTAGCTGTGAAAAGATTAAAAGAAGAACGCACACCAGGTGGAGAGCTACAATTTCAAACTGAAGTAGAGATGATTAGCATGGCTGTTCATCGAAATCTCCTTCGATTGCGTGGATTTTGTATGACACCAACCGAGCGATTACTCGTCTATCCCTACATGGCTAATGGAAGTGTTGCTTCATGTTTAAGAGAACGTCCGCCATCTCAACCTCCTTTAGATTGGCAAACAAGGAAGCGTATTGCATTGGGATCGGCAAGAGGACTTTCTTATTTGCACGATCACTGTGACCCAAAGATCATTCATCGGGATGTGAAAGCTGCCAATATATTACTTGATGAGGAATTCGAGGCTGTTGTTGGAGACTTTGGACTGGCTAAACTTATGGACTACAAGGATACTCACGTCACAACTGCTGTTCGAGGCACAATTGGTCATATTGCTCCTGAATACCTTTCAACCGGCAAATCGTCTGAGAAGACTGATGTTTTTGGATATGGAATCATGCTTCTGGAGCTGATTACTGGTCAGAGGGCTTTTGATCTTGCACGGCTTGCAAATGATGATGATGTCATGTTGCTTGATTGGGTGAAAGGACTTTTGAAAGAGAAAAAGCTAGAAATGCTGGTGGATCCTGATCTCCAAAACAACTACATAGAATCAGAGGTGGAGCAGTTAATCCAGGTTGCATTGCTCTGCACACAAGGCTCTCCGATGGACCGACCCAAAATGGCTGAAGTGGTGAGAATGCTGGAGGGCGATGGGTTGGCCGAGAAATGGGACGAGTGGCAAAAGATCGAAATTCTCCGCCAAGATCTTGAACTTGCGCCTCATCCTAATTCCGATTGGATCGTCGACTCAACAGAAAATCTCCACGCAGTTGAGCTCTCCGGTCCAAGATGA 1878 44.89 MEQGQVWNLACICLILLLRPLWLISANMEGDALHSLRSSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGRLVPQLGLLKNLQYLELYSNNISGIIPTDLGNLTSLVSLDLYLNGFTGLIPETLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGVVPDNGSFSLFTPISFANNFDLCGPVTGHPCPGSPPFSPPPPFVPPPPISTPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEYFFDVPAEEDPEVHLGQLKRFSLRELQVASDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWQTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYIESEVEQLIQVALLCTQGSPMDRPKMAEVVRMLEGDGLAEKWDEWQKIEILRQDLELAPHPNSDWIVDSTENLHAVELSGPR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83013773 83019372 + Bma003413.1 Bma01g02531 77048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02531 625 SUPERFAMILY Protein kinase-like (PK-like) 281 577 IPR011009 -
Bma01g02531 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Bma01g02531 625 Gene3D Ribonuclease Inhibitor 25 212 IPR032675 -
Bma01g02531 625 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Bma01g02531 625 SMART serkin_6 302 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02531 625 Gene3D Transferase(Phosphotransferase) domain 1 379 596 - -
Bma01g02531 625 SUPERFAMILY L domain-like 29 192 - -
Bma01g02531 625 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 9 625 IPR031048 GO:0004675|GO:0005102|GO:0006468
Bma01g02531 625 Pfam Protein kinase domain 303 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02531 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 625 - -
Bma01g02531 625 CDD STK_BAK1_like 308 579 - -
Bma01g02531 625 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515
Bma01g02531 625 SMART LRR_typ_2 164 189 IPR003591 -
Bma01g02531 625 SMART LRR_typ_2 140 163 IPR003591 -
Bma01g02531 625 SMART LRR_typ_2 116 139 IPR003591 -
Bma01g02531 625 SMART LRR_typ_2 92 115 IPR003591 -
Bma01g02531 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Bma01g02531 625 ProSiteProfiles Protein kinase domain profile. 302 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02531 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02531 Bma-Chr1:83013773 Bma12g00378 Bma-Chr12:7224813 0 dispersed
Bma03g00998 Bma-Chr3:10880338 Bma01g02531 Bma-Chr1:83013773 5.22E-103 dispersed
Bma08g00490 Bma-Chr8:24258110 Bma01g02531 Bma-Chr1:83013773 7.31E-66 dispersed
Bma11g00327 Bma-Chr11:3063246 Bma01g02531 Bma-Chr1:83013773 8.72E-59 dispersed
Bma01g02531 Bma-Chr1:83013773 Bma01g02534 Bma-Chr1:83036662 6.89E-19 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66310 PF00069 Pkinase 8.20E-45 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02531 K13418 - csv:101208695 1091.64