Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02539 ATGGCAGGCTCCGCGAAGAGCAACCCACTTTCTGTCTCTTCTACTTCGCGTAACCCTTTTCATTTCTCGCCCGAATCTCCTCCCCCGATCGCTGTCTCGCCCGATCAGATCAAATTCTGCTCTGAGGCTCTGAGGTTATTCAGGGAGAAGCTCCGGACGCCTCACACTATTTCGGAAGAGTTTATGAACTTGCAGCAGGCCAATAGAATCACGTTACCTACCATGCAAAGAAGTTGCACCGTGGCTCTTGACAGTGTCAACTTGAGCAAAAACCGCTACACAGATGTCATACCATTTGACAGTGCTAGAGTGGTACTCAACTCATGTAGAGATTACAGACCTTCTGCAAGGGGCTACATTAATGCGAGCTTTGTCTCGACTTCTTCTTCAGACAACGTTACTAAGTTCATAGCCACACAAGGTCCTCTACCACATACATACGAAGATTTCTGGGAGATGGTGATTCAGTACCGTTGTCCCGTGGTTGTGATGCTTACCAAATTAGTTGACAATTACACGTTTGTGAAATGTGGAGACTATTTCCAGGCAGAAGATGGTCCGAGAGATTTTGGCAATATATCTATTATCACCAAATGGATAGACACTTCTGACATTTCTTTAGTGTTGCGTCAATTAGAGGTCAAACACAAAGAGTCGGAAGAGGAACCTTTGTCGGTTTTGCATATTCAGTACCCTGAATGGCCTGACCATGGAGTTCCGGAGGACACAAAGGCCGTTCGAGAAATATTTAAACGAATATATCAAGTGCCTCCAAATCTAGGCCCAATAGTGGTTCATTGCAGTGCAGGTATTGGGAGAACTGGAGCATACTGCACTATACATAATACAATCCAAAGAATTCTTTCAGGAGACATGTCTGCTTTAGATCTTGCTAAAACCATTACTTGTTTTAGATCGCAGCGAATTGGAATGGTTCAAACTCTGGTAATTTTCATTTTCTCGTATCAAATAAGAGTTTTAGCGTATAATACTATGCGAGCATGGCATGTTATATGTAGTATGTTGATAATTGTGGGTTCTCCTCCATAA 1050 43.24 MAGSAKSNPLSVSSTSRNPFHFSPESPPPIAVSPDQIKFCSEALRLFREKLRTPHTISEEFMNLQQANRITLPTMQRSCTVALDSVNLSKNRYTDVIPFDSARVVLNSCRDYRPSARGYINASFVSTSSSDNVTKFIATQGPLPHTYEDFWEMVIQYRCPVVVMLTKLVDNYTFVKCGDYFQAEDGPRDFGNISIITKWIDTSDISLVLRQLEVKHKESEEEPLSVLHIQYPEWPDHGVPEDTKAVREIFKRIYQVPPNLGPIVVHCSAGIGRTGAYCTIHNTIQRILSGDMSALDLAKTITCFRSQRIGMVQTLVIFIFSYQIRVLAYNTMRAWHVICSMLIIVGSPP 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83087727 83090094 + Bma003419.1 Bma01g02539 77056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02539 349 ProSitePatterns Tyrosine specific protein phosphatases active site. 265 275 IPR016130 GO:0016311|GO:0016791
Bma01g02539 349 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 7 325 - -
Bma01g02539 349 Gene3D Protein tyrosine phosphatase superfamily 35 330 IPR029021 -
Bma01g02539 349 CDD PTPc_plant_PTP1 119 322 - -
Bma01g02539 349 ProSiteProfiles PTP type protein phosphatase domain profile. 57 328 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 330 IPR029021 -
Bma01g02539 349 SMART PTPc_3 56 330 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 MobiDBLite consensus disorder prediction 1 21 - -
Bma01g02539 349 PRINTS Protein tyrosine phosphatase signature 262 280 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 PRINTS Protein tyrosine phosphatase signature 136 156 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 PRINTS Protein tyrosine phosphatase signature 118 125 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 PRINTS Protein tyrosine phosphatase signature 224 241 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 PRINTS Protein tyrosine phosphatase signature 311 321 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 PRINTS Protein tyrosine phosphatase signature 295 310 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 Pfam Protein-tyrosine phosphatase 87 324 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 247 319 IPR000387 GO:0016311|GO:0016791
Bma01g02539 349 SMART ptp_7 225 327 IPR003595 -
Bma01g02539 349 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 7 325 - -
Bma01g02539 349 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02539 - - mnt:21399479 489.96