Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02539 ATGGCAGGCTCCGCGAAGAGCAACCCACTTTCTGTCTCTTCTACTTCGCGTAACCCTTTTCATTTCTCGCCCGAATCTCCTCCCCCGATCGCTGTCTCGCCCGATCAGATCAAATTCTGCTCTGAGGCTCTGAGGTTATTCAGGGAGAAGCTCCGGACGCCTCACACTATTTCGGAAGAGTTTATGAACTTGCAGCAGGCCAATAGAATCACGTTACCTACCATGCAAAGAAGTTGCACCGTGGCTCTTGACAGTGTCAACTTGAGCAAAAACCGCTACACAGATGTCATACCATTTGACAGTGCTAGAGTGGTACTCAACTCATGTAGAGATTACAGACCTTCTGCAAGGGGCTACATTAATGCGAGCTTTGTCTCGACTTCTTCTTCAGACAACGTTACTAAGTTCATAGCCACACAAGGTCCTCTACCACATACATACGAAGATTTCTGGGAGATGGTGATTCAGTACCGTTGTCCCGTGGTTGTGATGCTTACCAAATTAGTTGACAATTACACGTTTGTGAAATGTGGAGACTATTTCCAGGCAGAAGATGGTCCGAGAGATTTTGGCAATATATCTATTATCACCAAATGGATAGACACTTCTGACATTTCTTTAGTGTTGCGTCAATTAGAGGTCAAACACAAAGAGTCGGAAGAGGAACCTTTGTCGGTTTTGCATATTCAGTACCCTGAATGGCCTGACCATGGAGTTCCGGAGGACACAAAGGCCGTTCGAGAAATATTTAAACGAATATATCAAGTGCCTCCAAATCTAGGCCCAATAGTGGTTCATTGCAGTGCAGGTATTGGGAGAACTGGAGCATACTGCACTATACATAATACAATCCAAAGAATTCTTTCAGGAGACATGTCTGCTTTAGATCTTGCTAAAACCATTACTTGTTTTAGATCGCAGCGAATTGGAATGGTTCAAACTCTGGTAATTTTCATTTTCTCGTATCAAATAAGAGTTTTAGCGTATAATACTATGCGAGCATGGCATGTTATATGTAGTATGTTGATAATTGTGGGTTCTCCTCCATAA 1050 43.24 MAGSAKSNPLSVSSTSRNPFHFSPESPPPIAVSPDQIKFCSEALRLFREKLRTPHTISEEFMNLQQANRITLPTMQRSCTVALDSVNLSKNRYTDVIPFDSARVVLNSCRDYRPSARGYINASFVSTSSSDNVTKFIATQGPLPHTYEDFWEMVIQYRCPVVVMLTKLVDNYTFVKCGDYFQAEDGPRDFGNISIITKWIDTSDISLVLRQLEVKHKESEEEPLSVLHIQYPEWPDHGVPEDTKAVREIFKRIYQVPPNLGPIVVHCSAGIGRTGAYCTIHNTIQRILSGDMSALDLAKTITCFRSQRIGMVQTLVIFIFSYQIRVLAYNTMRAWHVICSMLIIVGSPP 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83087727 83090094 + Bma003419.1 Bma01g02539 77056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02539 349 ProSitePatterns Tyrosine specific protein phosphatases active site. 265 275 IPR016130 GO:0016311|GO:0016791
Bma01g02539 349 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 7 325 - -
Bma01g02539 349 Gene3D Protein tyrosine phosphatase superfamily 35 330 IPR029021 -
Bma01g02539 349 CDD PTPc_plant_PTP1 119 322 - -
Bma01g02539 349 ProSiteProfiles PTP type protein phosphatase domain profile. 57 328 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 330 IPR029021 -
Bma01g02539 349 SMART PTPc_3 56 330 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 MobiDBLite consensus disorder prediction 1 21 - -
Bma01g02539 349 PRINTS Protein tyrosine phosphatase signature 262 280 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 PRINTS Protein tyrosine phosphatase signature 136 156 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 PRINTS Protein tyrosine phosphatase signature 118 125 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 PRINTS Protein tyrosine phosphatase signature 224 241 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 PRINTS Protein tyrosine phosphatase signature 311 321 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 PRINTS Protein tyrosine phosphatase signature 295 310 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 Pfam Protein-tyrosine phosphatase 87 324 IPR000242 GO:0004725|GO:0006470
Bma01g02539 349 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 247 319 IPR000387 GO:0016311|GO:0016791
Bma01g02539 349 SMART ptp_7 225 327 IPR003595 -
Bma01g02539 349 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 7 325 - -
Bma01g02539 349 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02539 - - - mnt:21399479 489.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1273 Blo01g01756 . . . . . . Bma01g02539 . . . Cma09g01150 . . . Cpe06g00927 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00846 . . . . . . . Cmo09g01160 . . . . . . Bhi09g01578 Tan01g3003 . . . . . Cla09g00969 Cam09g1020 Cec09g1024 Cco09g1035 . . Cre09g0986 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00514 BCT 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.2 5.6e-185 644.4
Bma03g01356 BCT 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.3 2.4e-180 629.0
Bma15g00872 . 42 591 Protein tyrosine phosphatase (PTP) family AT3G50110 59.6 1.9e-177 619.4
Bma02g00437 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 7.6e-151 530.4
Bma08g01169 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1132.9
Bma08g01169 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 62.9 1.3e-311 1065.4
Bma02g00008 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.1e-284 975.7
Bma04g00272 . 566 933 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 1.4e-102 371.7
Bma01g02539 . 23 322 Protein tyrosine phosphatase (PTP) family AT1G71860 65.4 2.3e-116 415.6
Bma04g01172 . 1 129 Protein tyrosine phosphatase (PTP) family AT3G23610 51.9 7.9e-37 150.2
Bma04g01175 . 1 129 Protein tyrosine phosphatase (PTP) family AT3G23610 51.9 7.9e-37 150.2
Bma08g00279 . 2 197 Protein tyrosine phosphatase (PTP) family AT5G23720 61.2 3.1e-59 227.3
Bma04g01172 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.2 2.6e-41 165.2
Bma04g01175 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.2 2.6e-41 165.2
Bma03g01302 . 1 190 Protein tyrosine phosphatase (PTP) family AT2G04550 67.9 2.5e-66 248.4
Bma03g00369 . 17 294 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 4.2e-116 414.5
Bma03g00203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 69.3 1.2e-107 386.3
Bma01g00998 . 137 580 Protein tyrosine phosphatase (PTP) family AT3G01510 71.0 3.6e-194 674.5
Bma01g00978 . 137 580 Protein tyrosine phosphatase (PTP) family AT3G01510 70.4 6.7e-193 670.2
Bma02g01405 . 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 57.0 1.1e-70 263.5
Bma03g01308 BCT 20 210 Protein tyrosine phosphatase (PTP) family AT2G32960 55.6 1.8e-65 246.1
Bma08g00538 . 1 133 Protein tyrosine phosphatase (PTP) family AT2G32960 59.2 8.1e-50 194.1
Bma02g00600 . 13 160 Protein tyrosine phosphatase (PTP) family AT2G32960 51.1 1.4e-49 193.4
Bma08g00533 BCT 51 152 Protein tyrosine phosphatase (PTP) family AT2G32960 60.3 1.9e-38 156.4
Bma14g00635 . 1 319 Protein tyrosine phosphatase (PTP) family AT2G35680 56.4 6.6e-100 360.9
Bma01g00214 . 6 266 Protein tyrosine phosphatase (PTP) family AT2G35680 52.3 2.4e-78 289.3
Bma02g01405 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 72.4 2.5e-75 278.5
Bma03g01308 BCT 36 210 Protein tyrosine phosphatase (PTP) family AT4G03960 67.4 3.5e-69 258.1
Bma02g00600 . 9 164 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.5e-53 204.9
Bma08g00538 . 1 133 Protein tyrosine phosphatase (PTP) family AT4G03960 66.9 3.7e-50 194.9
Bma08g00533 BCT 30 152 Protein tyrosine phosphatase (PTP) family AT4G03960 60.0 1.3e-39 159.8
Bma02g00600 . 3 199 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 3.7e-82 301.2
Bma03g01308 BCT 45 202 Protein tyrosine phosphatase (PTP) family AT3G02800 62.0 3.5e-56 214.9
Bma02g01405 . 47 205 Protein tyrosine phosphatase (PTP) family AT3G02800 61.0 7.8e-56 213.8
Bma08g00538 . 1 125 Protein tyrosine phosphatase (PTP) family AT3G02800 57.6 1.9e-38 156.0
Bma03g00116 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 63.0 5.9e-59 226.1
Bma02g00437 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 7.6e-151 530.4
Bma08g00514 BCT 8 605 Protein tyrosine phosphatase (PTP) family AT3G19420 66.9 1.0e-228 789.6
Bma03g01356 BCT 32 610 Protein tyrosine phosphatase (PTP) family AT3G19420 67.1 5.0e-223 770.8
Bma15g00872 . 34 591 Protein tyrosine phosphatase (PTP) family AT3G19420 57.4 4.0e-188 654.8
Bma08g00514 BCT 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.2 5.6e-185 644.4
Bma03g01356 BCT 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.3 2.4e-180 629.0
Bma15g00872 . 42 591 Protein tyrosine phosphatase (PTP) family AT3G50110 59.6 1.9e-177 619.4
Bma02g00008 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.1e-284 975.7
Bma04g00272 . 566 933 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 1.4e-102 371.7
Bma08g01169 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1132.9
Bma08g01169 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 62.9 1.3e-311 1065.4
Bma14g00419 . 56 243 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 2.8e-74 275.4
Bma12g00216 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 62.0 9.8e-111 396.7
Bma10g00319 . 1 661 Protein tyrosine phosphatase (PTP) family AT3G09100 70.5 2.2e-288 988.0
Bma10g00319 . 5 661 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 5.9e-262 900.2
Bma10g00319 . 87 668 Protein tyrosine phosphatase (PTP) family AT5G28210 57.9 7.7e-187 650.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008867 1 2 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 33