Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02552 ATGGTGAATTCTATGGTAGGACGTGCGACTAGCGATATGCTGATCGGTCCTGATTGGGCAATGAATATCGAGATCTGTGACATGCTCAATAACGACCCCGGGCAAGCAAAAGATGTTATTAAAGGTATGAAGAAGCGCCTTAGACGTAAGAACAGCAAAGTTCAACTTCTTACCTTGACGCTGTTGGAGACAATAGTTAAGAATTGTGGCGACATTGTACATATGCATGTGGCAGAGAAAGGTGTTCTTCATGATATGGTAAAAATGGCAAAAAAGAAGCCTGACTTTAATGTCAAAGAGAAAATATTGATTCTGATTGATACCTGGCAAGAAGCTTTTGGAGGACCAAGGGCAAGATATCCACAATACTACGCTGCATACCAGGAATTATTGCATGCCGGGGCAGTTTTCCCTCAGAGAGTGGAGAGGTCTGCCCCTGTACTCACACCACCACAAACACAACCTTTGACATCATATCCTCACAATCTACATAATCCAGATATTCAGACCAACATACCTGGATCTTCTGCAGACTCTGAATTTCCAACATTAAGCTTGTCTGAAATTCAGAATGCACGCGGGATTATGGATGTTCTAGCTGAAATGCTCAATGCAATAGATCCGGGGAACAAAGAGGGTTTAAGAGAAGAGGTTATTGTTGACTTAGTGGAACAGTGTCGTACTTACAAGCAGAGAGTGGTTCATCTTGTTAACTCCACTGCGGATGAGTCGTTACTTTGCCAAGGACTGGCACTCAATGACGATTTGCAGCGATTGCTTGCCAAGCATGAAGCCATTGCTTCTGGAACTTCGACTCGGGAGCCCAAGTCTGACCCTTCTAAAGCACTTGTTGACATTGATGGTCCTCTTGTTGATACTGAAAATGTCAGTAAAGAATCTGAACCAAGAGCATCAAGTGCAGGCGCAGGATCTCAAACACTTAATCAGCTATTGCTTCCAGCGCCTCCTGGTGCCGATGGTTCAGCTCCTCTCATCAAGGTTGACACTATTGACTTGTTGAGTGGCGATATGTTCAATTCTCCAAAGGCAGATACTTCTCAAGCTCTTGTTCCAGTTCCATTCGGAGAGCATCATCCTCCCACTCCTTCATCCCATCAGAATGCCCTTGTTCTTTTTGACATGTTTTCTGGTGATAACAATTCATCTAATTCTTCCATTCAGCCTGGACAAGCTATTCCCTTGCCCTCTCAAACTCAACAGCACGAGAATATCCCATCTGCACCTAGTGGATTTTACCCCAATGGAAATACGCCTAGCTTGGAGTCGACTCATAATGAGCATTCAGTATATGAGGCTCAGGGTCCTGGTTCTTCTTTGCATGATGGCCAGTTTACTCAGCATCAGCAACAACAACAATCAATTCCAGCGGTCTATGGTGCTCAAAGTGGCGAATCATTGCCAGCACCCCCCTGGGAAGCTACAGTTGATGCAGATATTCAACTAGTTTGTGATGATTCTAACATATTTAAATGGACTGCTCTTATTAAGACTCCTTGTGAGGGTGGGGTTTTCCAGCAAGCATTTGCTGTTCCTGAGCAGTATCCTTTGCAACCTCCTCAAGTGCGATTTCTAAAAAAAAATTTCATCCAAATGTACACTTTTAAGGAATTCGGGTCACACCAAATTCTAACATGGAGTCCAGCTTGGACGCTCCAATCTGTATGTAGGGCAATAATTGCTTTGATGGCACATCCCGAAGCTGACAGTCCGTTGAACTGTGATTCTGGCAATCTTCTGCGTTCTGGTGATATTCGAGGCTATCAGTCGATGGCAAGGATGTATGCTAGACTGGCGGCCATGCCCAAGAAAGGTTGA 1836 44.39 MVNSMVGRATSDMLIGPDWAMNIEICDMLNNDPGQAKDVIKGMKKRLRRKNSKVQLLTLTLLETIVKNCGDIVHMHVAEKGVLHDMVKMAKKKPDFNVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLHAGAVFPQRVERSAPVLTPPQTQPLTSYPHNLHNPDIQTNIPGSSADSEFPTLSLSEIQNARGIMDVLAEMLNAIDPGNKEGLREEVIVDLVEQCRTYKQRVVHLVNSTADESLLCQGLALNDDLQRLLAKHEAIASGTSTREPKSDPSKALVDIDGPLVDTENVSKESEPRASSAGAGSQTLNQLLLPAPPGADGSAPLIKVDTIDLLSGDMFNSPKADTSQALVPVPFGEHHPPTPSSHQNALVLFDMFSGDNNSSNSSIQPGQAIPLPSQTQQHENIPSAPSGFYPNGNTPSLESTHNEHSVYEAQGPGSSLHDGQFTQHQQQQQSIPAVYGAQSGESLPAPPWEATVDADIQLVCDDSNIFKWTALIKTPCEGGVFQQAFAVPEQYPLQPPQVRFLKKNFIQMYTFKEFGSHQILTWSPAWTLQSVCRAIIALMAHPEADSPLNCDSGNLLRSGDIRGYQSMARMYARLAAMPKKG 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83171654 83182222 + Bma003434.1 Bma01g02552 77069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02552 611 MobiDBLite consensus disorder prediction 382 462 - -
Bma01g02552 611 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Bma01g02552 611 Gene3D Ubiquitin Conjugating Enzyme 477 606 IPR016135 -
Bma01g02552 611 SUPERFAMILY UBC-like 484 607 IPR016135 -
Bma01g02552 611 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Bma01g02552 611 CDD GAT_GGA_like_plant 188 266 - -
Bma01g02552 611 PANTHER TARGET OF MYB PROTEIN 1 1 540 - -
Bma01g02552 611 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Bma01g02552 611 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Bma01g02552 611 Gene3D - 1 135 IPR008942 -
Bma01g02552 611 Pfam VHS domain 3 123 IPR002014 GO:0035091|GO:0043130
Bma01g02552 611 PANTHER TOM1-LIKE PROTEIN 1 540 IPR044836 GO:0035091|GO:0043130|GO:0043328
Bma01g02552 611 CDD VHS 2 130 - -
Bma01g02552 611 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 456 607 IPR000608 -
Bma01g02552 611 Pfam Ubiquitin-conjugating enzyme 489 601 IPR000608 -
Bma01g02552 611 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Bma01g02552 611 MobiDBLite consensus disorder prediction 268 289 - -
Bma01g02552 611 SUPERFAMILY GAT-like domain 139 269 - -
Bma01g02552 611 SMART ubc_7 469 607 - -
Bma01g02552 611 Gene3D - 183 276 IPR038425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02552 - - - mnt:21390666 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02552 Bma-Chr1:83171654 Bma04g00022 Bma-Chr4:275443 7.28E-101 dispersed
Bma01g01338 Bma-Chr1:18629867 Bma01g02552 Bma-Chr1:83171654 0 wgd
Bma01g02552 Bma-Chr1:83171654 Bma04g00401 Bma-Chr4:3274224 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g317 Blo01g01771 . . Bda03g00426 . Bpe02g00173 . Bma01g02552 Cmo05g00625 Cmo12g00213 . Cma05g00599 . Car12g00244 Sed01g1278 Cpe07g00224 . Bhi04g00831 Tan02g2574 Cmetu03g0651 . Hepe10g0349 . Lcy13g1394 . . . . . . . . . . . . . . Cme03g01732 . . . . . Bpe04g00392 . . . . . . Cma12g00260 . Car05g00542 Cpe11g00523 . . . . . . . . Cla08g01231 . . . . . . Lsi08g01094 . Chy03g01238 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003825 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 45